BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:220.8 nTPM
HPA Brain:128.6 nTPM
GTEx:220.8 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:265.2 nTPM
Mouse:63.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 128.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 108.0
1857 Female, age 85, left hemisphere 148.2
2290 Female, age 72, unknown 128.4
1854 Male, age 80, left hemisphere 127.3
2481 Female, age 94, left hemisphere 109.0
1781 Male, age 74, unknown 98.5
2289 Male, age 61, right hemisphere 94.9
2846 Female, age 79, unknown 80.5
2288 Male, age 75, left hemisphere 76.9
Globus pallidus, externus
nTPM: 128.6
1996 Male, age 80, right hemisphere 175.8
2646 Male, age 61, right hemisphere 145.5
2772 Female, age 79, unknown 126.7
2567 Female, age 72, unknown 99.3
2395 Male, age 75, both hemispheres 95.6
Globus pallidus, internus
nTPM: 117.4
2037 Male, age 80, right hemisphere 152.7
2483 Female, age 94, right hemisphere 141.8
1818 Male, age 74, unknown 117.4
2287 Male, age 75, right hemisphere 115.9
2778 Female, age 91, both hemispheres 105.1
2566 Female, age 72, unknown 98.9
2111 Female, age 85, right hemisphere 90.3
Nucleus accumbens
nTPM: 117.3
1806 Female, age 85, left hemisphere 157.6
1856 Female, age 91, right hemisphere 134.1
2732 Male, age 80, right hemisphere 126.5
2698 Female, age 72, unknown 122.4
1783 Male, age 74, unknown 119.3
2286 Male, age 75, left hemisphere 100.3
2824 Male, age 61, right hemisphere 94.2
2391 Female, age 94, left hemisphere 83.7
Nucleus basalis of Meynert
nTPM: 115.3
2569 Male, age 61, both hemispheres 167.1
2393 Male, age 80, right hemisphere 117.7
2484 Female, age 94, left hemisphere 103.2
2821 Male, age 75, both hemispheres 73.2
Nucleus of the diagonal band
nTPM: 105.5
1979 Male, age 74, unknown 147.0
2195 Female, age 85, both hemispheres 104.2
1812 Female, age 91, both hemispheres 103.4
2775 Male, age 80, right hemisphere 100.7
2029 Male, age 61, right hemisphere 72.5
Putamen
nTPM: 102.8
1838 Male, age 80, right hemisphere 120.6
2647 Male, age 75, left hemisphere 108.7
2489 Female, age 72, unknown 108.4
1937 Female, age 91, right hemisphere 102.6
2482 Female, age 94, left hemisphere 100.5
2466 Female, age 79, unknown 94.5
1829 Male, age 74, unknown 84.6
Septal nuclei
nTPM: 105.2
2199 Male, age 80, right hemisphere 155.0
2059 Female, age 85, both hemispheres 140.3
2009 Female, age 91, both hemispheres 100.3
1960 Male, age 74, unknown 98.6
2394 Male, age 61, left hemisphere 85.7
2031 Female, age 72, unknown 83.3
2629 Female, age 94, right hemisphere 73.2
Stria terminalis, bed nucleus
nTPM: 77.0
2201 Male, age 74, unknown 91.7
1974 Female, age 91, both hemispheres 77.0
2486 Female, age 94, both hemispheres 62.2

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 220.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 167.8
Samples: 300

Max nTPM: 431.7
Min nTPM: 50.3
Std nTPM: 56.8
Median nTPM: 156.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 431.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 391.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 346.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 341.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 322.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 310.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 307.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 307.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 305.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 302.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 301.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 220.8
Samples: 285

Max nTPM: 915.2
Min nTPM: 100.6
Std nTPM: 85.8
Median nTPM: 203.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 915.2
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 755.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 527.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 426.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 421.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 417.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 415.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 411.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 385.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 384.7
GTEX-14BIL-0011-R6b-SM-GPRXF 50-59 years, male 373.3
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Brain - Putamen (basal ganglia)
Average nTPM: 184.1
Samples: 254

Max nTPM: 514.2
Min nTPM: 83.2
Std nTPM: 63.2
Median nTPM: 169.9
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 514.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 419.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 417.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 369.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 367.0
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 359.9
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 336.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 334.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 317.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 309.8
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 309.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.5
FF:10164-103B2 76 years, female 72.5
Nucleus accumbens
Scaled Tags Per Million: 30.5
FF:10037-101F1 23-56 years, mixed 30.5
Putamen
Scaled Tags Per Million: 51.9
FF:10176-103C5 60 years, female 51.9
Globus pallidus
Scaled Tags Per Million: 50.8
FF:10161-103A8 76 years, female 56.1
FF:10175-103C4 60 years, female 45.5

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 265.2
Pig sample Sample description nTPM
Caudate
nTPM: 265.2
Samples: 4

Max nTPM: 315.4
Min nTPM: 192.3
Sample A Female 254.7
Sample B Female 298.2
Sample C Male 315.4
Sample D Male 192.3
Putamen
nTPM: 214.5
Samples: 4

Max nTPM: 238.8
Min nTPM: 185.1
Sample A Female 198.7
Sample B Female 185.1
Sample C Male 238.8
Sample D Male 235.2
Septum
nTPM: 159.2
Samples: 4

Max nTPM: 240.6
Min nTPM: 81.9
Sample A Female 240.6
Sample B Female 194.1
Sample C Male 120.3
Sample D Male 81.9
Ventral pallidum
nTPM: 196.4
Samples: 4

Max nTPM: 249.0
Min nTPM: 134.2
Sample A Female 195.7
Sample B Female 249.0
Sample C Male 134.2
Sample D Male 206.6

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 63.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.6
Samples: 4

Max nTPM: 71.6
Min nTPM: 52.6
Sample A Male 62.7
Sample B Male 71.6
Sample C Female 52.6
Sample D Female 55.5
Septum
nTPM: 44.0
Samples: 4

Max nTPM: 46.7
Min nTPM: 38.5
Sample A Male 46.7
Sample B Male 45.1
Sample C Female 45.8
Sample D Female 38.5
Ventral forebrain
nTPM: 63.1
Samples: 4

Max nTPM: 74.8
Min nTPM: 57.9
Sample A Male 59.5
Sample B Male 60.3
Sample C Female 74.8
Sample D Female 57.9

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1912 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
1913 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
68498944 Antisense, RP_050113_02_F08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
1912 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0
1913 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0
68498944 Antisense, RP_050113_02_F08, Mouse strain C57BL/6J (56 days, male) 0.0

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