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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:267.5 nTPM
GTEx:267.5 nTPM
FANTOM5:115.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 267.5
Samples: 105

Max nTPM: 732.3
Min nTPM: 47.4
Std nTPM: 158.8
Median nTPM:
354_1 81 years, female 732.3
352_1 62 years, male 725.7
218_1 71 years, female 707.6
356_1 87 years, female 634.5
163_1 78 years, male 590.7
350_1 84 years, female 558.5
172_1 72 years, female 554.1
349_1 83 years, male 551.8
243_1 75 years, male 530.5
319_1 81 years, male 520.1
353_1 82 years, female 517.3
386_1 76 years, male 501.4
355_1 70 years, female 475.2
377_1 82 years, female 463.5
177_1 74 years, male 459.7
351_1 91 years, male 451.1
376_1 75 years, female 417.1
394_1 75 years, female 403.1
335_1 73 years, female 381.6
321_1 62 years, female 375.8
503_1 68 years, male 375.8
447_1 81 years, male 371.9
6_1 73 years, female 367.9
293_1 68 years, female 366.4
292_1 71 years, male 366.0
425_1 59 years, female 363.1
237_1 82 years, male 362.4
318_1 68 years, male 354.0
379_1 60 years, male 342.1
317_1 60 years, male 334.1
320_1 89 years, female 330.2
286_1 68 years, female 329.6
375_1 74 years, female 326.6
173_1 67 years, male 323.8
452_1 88 years, female 323.4
389_1 86 years, female 300.8
384_1 83 years, male 297.8
347_1 72 years, male 297.7
99_1 64 years, male 295.1
295_1 61 years, female 290.1
316_1 62 years, male 289.6
406_1 79 years, male 286.3
229_1 69 years, female 280.9
506_1 65 years, male 279.3
189_1 76 years, male 274.9
251_1 78 years, male 269.3
246_1 77 years, male 256.7
322_1 76 years, male 252.4
480_1 63 years, male 250.0
526_1 61 years, male 249.8
115_1 83 years, male 248.0
405_1 91 years, male 247.3
291_1 76 years, male 245.8
517_1 88 years, male 245.8
266_1 85 years, male 238.1
265_1 87 years, male 232.5
264_1 73 years, female 231.6
404_1 82 years, female 226.8
9_1 66 years, female 222.8
468_1 89 years, male 216.4
348_1 84 years, male 209.2
396_1 62 years, male 194.9
254_1 77 years, female 188.6
217_1 76 years, male 183.9
324_1 76 years, male 179.6
153_1 70 years, female 178.6
311_1 78 years, male 177.9
35_1 74 years, female 176.2
2_1 77 years, female 171.1
137_1 83 years, male 168.8
4_1 88 years, female 168.3
518_1 75 years, female 166.4
145_1 84 years, male 159.5
126_1 63 years, male 155.9
120_1 70 years, female 153.3
17_1 71 years, male 149.7
18_1 88 years, male 147.9
109_1 81 years, female 142.8
315_1 62 years, female 138.8
415_1 77 years, female 136.5
499_1 55 years, female 130.9
307_1 66 years, female 129.9
288_1 66 years, female 129.7
313_1 79 years, female 128.5
414_1 84 years, female 127.5
142_1 61 years, female 121.4
117_1 61 years, male 120.0
42_1 85 years, male 119.5
162_1 79 years, female 115.0
314_1 67 years, male 113.6
41_1 94 years, female 111.3
81_1 67 years, male 111.3
308_1 70 years, female 95.6
32_1 67 years, male 93.1
43_1 64 years, female 92.6
119_1 70 years, female 87.6
466_1 57 years, female 86.7
139_1 64 years, female 83.8
89_1 63 years, male 75.0
413_1 59 years, female 69.5
495_1 57 years, female 64.6
490_1 67 years, female 64.4
501_1 88 years, male 56.5
149_1 88 years, male 52.0
491_1 89 years, female 47.4
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

115.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 115.9
FF:10030-101E3 24-65 years, mixed 115.9

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