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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.8
nTPM
HPA Brain:
60.3
nTPM
GTEx:
24.8
nTPM
FANTOM5:
0.3
Scaled Tags Per Million
Pig:
74.6
nTPM
Mouse:
68.5
nTPM
Allen mouse:
3.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA055353
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 38.9
1911
Female, age 85, right hemisphere
86.5
2621
Female, age 67, right hemisphere
50.5
2529
Female, age 94, left hemisphere
46.1
1855
Male, age 76, left hemisphere
27.4
2148
Female, age 91, left hemisphere
14.3
1898
Male, age 80, left hemisphere
8.4
Dentate gyrus nTPM: 10.9
1927
Female, age 91, both hemispheres
32.0
2010
Male, age 76, both hemispheres
9.2
2531
Female, age 67, both hemispheres
8.5
2528
Male, age 74, both hemispheres
7.5
2246
Female, age 85, both hemispheres
7.2
2530
Female, age 94, left hemisphere
1.4
Entorhinal gyrus nTPM: 11.0
2613
Female, age 94, left hemisphere
17.3
1938
Female, age 85, left hemisphere
15.5
2117
Female, age 91, right hemisphere
13.6
1787
Male, age 76, left hemisphere
8.9
2764
Male, age 80, right hemisphere
5.6
2686
Male, age 75, right hemisphere
4.9
Hippocampus, CA1 nTPM: 60.3
2749
Male, age 80, left hemisphere
150.3
2527
Male, age 74, both hemispheres
76.0
2082
Female, age 91, right hemisphere
46.9
2045
Male, age 76, both hemispheres
16.6
1873
Female, age 85, both hemispheres
11.6
Hippocampus, CA2 nTPM: 33.0
2249
Male, age 74, both hemispheres
83.4
2113
Female, age 91, right hemisphere
59.3
1940
Female, age 85, left hemisphere
25.9
1963
Male, age 80, left hemisphere
16.6
1892
Male, age 76, both hemispheres
8.0
2437
Female, age 94, left hemisphere
4.6
Hippocampus, CA3 nTPM: 50.5
2137
Male, age 80, left hemisphere
173.8
2436
Male, age 74, both hemispheres
78.4
1867
Male, age 76, both hemispheres
27.5
1891
Female, age 85, both hemispheres
15.2
2620
Female, age 94, left hemisphere
5.1
2861
Female, age 67, both hemispheres
2.8
Parahippocampal cortex nTPM: 15.3
2245
Female, age 91, both hemispheres
62.9
2018
Male, age 76, both hemispheres
27.0
2250
Female, age 67, right hemisphere
13.7
1933
Female, age 85, both hemispheres
12.2
2692
Male, age 74, both hemispheres
11.1
1990
Female, age 91, right hemisphere
8.5
1850
Male, age 80, both hemispheres
8.1
2622
Female, age 67, right hemisphere
5.1
2532
Female, age 72, left hemisphere
2.4
2693
Female, age 94, both hemispheres
2.4
Perirhinal gyrus nTPM: 5.5
1847
Female, age 91, left hemisphere
14.4
2521
Female, age 94, right hemisphere
6.3
1794
Male, age 80, right hemisphere
2.6
2848
Male, age 76, right hemisphere
2.2
1841
Female, age 85, right hemisphere
2.0
Subiculum nTPM: 25.4
1901
Male, age 80, both hemispheres
66.0
2042
Male, age 76, both hemispheres
58.7
2729
Female, age 91, right hemisphere
11.0
2438
Female, age 94, left hemisphere
6.5
1977
Female, age 85, both hemispheres
6.2
2619
Male, age 74, both hemispheres
3.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 24.8
Samples: 197
Max nTPM: 164.2
Min nTPM: 0.1
Std nTPM: 32.4
Median nTPM: 8.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
164.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
151.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
126.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
117.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
116.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
100.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
99.8
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
99.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
97.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
93.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
89.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
86.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
86.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
84.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
83.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
83.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
82.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
80.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
80.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
77.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
76.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
75.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
72.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
71.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
66.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
63.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
62.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
61.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
59.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
58.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
57.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
56.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
54.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
51.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
50.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
49.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
48.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
48.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
47.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
46.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
46.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
46.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
46.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
44.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
44.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
43.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
42.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
40.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
40.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
39.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
39.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
37.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
37.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
37.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
36.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
36.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
34.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
33.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
32.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
30.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
28.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
27.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
27.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
26.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
26.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
26.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
25.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
25.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
24.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
24.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
22.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
22.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
22.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
22.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
20.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
20.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
20.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
20.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
18.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
17.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
16.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
15.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
14.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
14.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
14.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
13.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
12.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
12.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
11.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
11.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
11.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
10.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
10.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
10.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
9.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
8.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
8.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
8.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
8.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
7.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
7.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
6.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
6.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
6.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
6.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
5.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
5.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
5.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
5.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
4.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
4.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
4.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
4.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
4.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
4.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
3.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
3.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
3.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
3.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
3.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
3.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
3.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
3.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
3.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
2.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
2.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
2.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
2.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
2.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
2.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
2.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
2.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
2.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
2.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
2.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
2.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
2.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
1.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
1.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
1.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
1.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
1.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
1.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
1.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
1.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
1.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
1.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
1.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
1.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
1.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
1.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
1.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
1.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
1.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
0.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
0.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
0.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
0.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
0.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
0.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
0.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
0.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
0.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
0.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
0.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
0.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
0.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
0.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
0.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
0.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
0.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
0.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
0.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
0.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
0.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
0.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
0.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
0.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
0.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
0.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
0.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
0.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
68.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 15.6
Samples: 4
Max nTPM: 28.0
Min nTPM: 4.8
Sample A
Male
9.6
Sample B
Male
4.8
Sample C
Female
28.0
Sample D
Female
20.1
Hippocampal formation nTPM: 68.5
Samples: 4
Max nTPM: 94.2
Min nTPM: 54.0
Sample A
Male
54.0
Sample B
Male
67.6
Sample C
Female
94.2
Sample D
Female
58.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.