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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Photoreceptor cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1359.9 nTPM
GTEx:1359.9 nTPM
FANTOM5:1314.6 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA004946
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1359.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1359.9
Samples: 105

Max nTPM: 2633.9
Min nTPM: 254.1
Std nTPM: 539.5
Median nTPM:
246_1 77 years, male 2633.9
377_1 82 years, female 2441.3
376_1 75 years, female 2265.3
319_1 81 years, male 2254.3
6_1 73 years, female 2246.5
163_1 78 years, male 2234.3
503_1 68 years, male 2225.7
468_1 89 years, male 2165.3
425_1 59 years, female 2100.0
243_1 75 years, male 2068.9
394_1 75 years, female 2050.0
526_1 61 years, male 2040.8
335_1 73 years, female 2029.1
189_1 76 years, male 2006.0
115_1 83 years, male 1983.1
266_1 85 years, male 1980.6
265_1 87 years, male 1928.0
177_1 74 years, male 1923.9
9_1 66 years, female 1899.0
126_1 63 years, male 1883.7
172_1 72 years, female 1872.8
229_1 69 years, female 1860.8
389_1 86 years, female 1853.7
480_1 63 years, male 1843.9
349_1 83 years, male 1825.4
217_1 76 years, male 1795.7
286_1 68 years, female 1793.5
355_1 70 years, female 1790.9
405_1 91 years, male 1764.5
251_1 78 years, male 1763.8
153_1 70 years, female 1759.3
352_1 62 years, male 1758.9
386_1 76 years, male 1707.5
406_1 79 years, male 1699.9
356_1 87 years, female 1692.9
354_1 81 years, female 1670.7
414_1 84 years, female 1668.4
292_1 71 years, male 1661.6
316_1 62 years, male 1656.9
404_1 82 years, female 1637.7
518_1 75 years, female 1571.7
517_1 88 years, male 1555.7
318_1 68 years, male 1545.9
109_1 81 years, female 1542.5
415_1 77 years, female 1460.5
18_1 88 years, male 1411.5
351_1 91 years, male 1401.7
254_1 77 years, female 1394.2
396_1 62 years, male 1387.9
350_1 84 years, female 1380.5
17_1 71 years, male 1366.4
324_1 76 years, male 1307.6
466_1 57 years, female 1294.7
375_1 74 years, female 1275.9
32_1 67 years, male 1275.2
348_1 84 years, male 1273.4
353_1 82 years, female 1268.4
2_1 77 years, female 1264.6
447_1 81 years, male 1264.5
384_1 83 years, male 1240.7
320_1 89 years, female 1236.7
499_1 55 years, female 1236.7
321_1 62 years, female 1220.8
293_1 68 years, female 1216.7
162_1 79 years, female 1189.0
81_1 67 years, male 1183.7
120_1 70 years, female 1153.9
291_1 76 years, male 1142.8
142_1 61 years, female 1126.1
379_1 60 years, male 1119.4
315_1 62 years, female 1111.0
295_1 61 years, female 1015.6
288_1 66 years, female 989.3
317_1 60 years, male 975.3
452_1 88 years, female 935.7
149_1 88 years, male 917.7
117_1 61 years, male 905.8
264_1 73 years, female 898.9
145_1 84 years, male 886.4
99_1 64 years, male 886.0
35_1 74 years, female 861.5
137_1 83 years, male 857.6
4_1 88 years, female 849.7
43_1 64 years, female 849.1
506_1 65 years, male 822.7
347_1 72 years, male 794.1
322_1 76 years, male 775.1
308_1 70 years, female 766.9
313_1 79 years, female 766.7
311_1 78 years, male 764.2
413_1 59 years, female 737.3
237_1 82 years, male 722.3
139_1 64 years, female 711.3
314_1 67 years, male 691.4
173_1 67 years, male 676.7
218_1 71 years, female 629.0
495_1 57 years, female 596.7
501_1 88 years, male 542.1
307_1 66 years, female 526.9
42_1 85 years, male 508.0
119_1 70 years, female 502.1
490_1 67 years, female 478.8
89_1 63 years, male 445.3
41_1 94 years, female 386.9
491_1 89 years, female 254.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1314.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1314.6
FF:10030-101E3 24-65 years, mixed 1314.6

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