We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ILF3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ILF3
TISSUE PRIMARY DATA PUTAMEN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:74.5 nTPM
GTEx:32.1 nTPM
FANTOM5:153.2 Scaled Tags Per Million
Pig:65.7 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.5
Sample id Sample description nTPM
Putamen
nTPM: 74.5
2647 Male, age 75, left hemisphere 80.9
2489 Female, age 72, unknown 77.2
1829 Male, age 74, unknown 75.5
1838 Male, age 80, right hemisphere 73.0
1937 Female, age 91, right hemisphere 72.3
2466 Female, age 79, unknown 71.2
2482 Female, age 94, left hemisphere 71.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 32.1
Samples: 254

Max nTPM: 53.5
Min nTPM: 21.4
Std nTPM: 4.4
Median nTPM: 31.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 53.5
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 50.4
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 48.8
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 47.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 44.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 42.9
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 41.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 41.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 40.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 40.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 40.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 39.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 39.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 39.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 39.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 38.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 38.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 37.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 37.7
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 37.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 37.6
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 37.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 37.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 37.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 37.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 37.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 36.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 36.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 36.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 36.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 36.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 36.6
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 36.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 36.5
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 36.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 36.4
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 36.1
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 36.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 36.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 36.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 35.9
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 35.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 35.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 35.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 35.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 35.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 35.5
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 35.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 35.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 35.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 35.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 35.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 35.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 35.1
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 35.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 35.1
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 35.0
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 34.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 34.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 34.7
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 34.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 34.6
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 34.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 34.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 34.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 34.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 34.2
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 34.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 34.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 34.1
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 34.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 34.0
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 33.9
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 33.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 33.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 33.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 33.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 33.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 33.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 33.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 33.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 33.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 33.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 33.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 33.4
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 33.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 33.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 33.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 33.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 33.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 33.2
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 33.1
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 33.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 33.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 33.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 32.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 32.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 32.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 32.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 32.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 32.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 32.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 32.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 32.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 32.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 32.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 32.4
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 32.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 32.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 32.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 32.3
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 32.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 32.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 32.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 32.2
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 32.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 32.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 32.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 32.1
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 32.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 32.0
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 31.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 31.8
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 31.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 31.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 31.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 31.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 31.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 31.7
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 31.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 31.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 31.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 31.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 31.5
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 31.5
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 31.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 31.4
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 31.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 31.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 31.2
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 31.2
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 31.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 31.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 31.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 31.1
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 31.0
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 31.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 30.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 30.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 30.8
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 30.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 30.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 30.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 30.6
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 30.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 30.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 30.5
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 30.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 30.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 30.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 30.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 30.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 30.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 30.3
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 30.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 30.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 30.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 30.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 30.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 30.0
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 30.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 29.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 29.9
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 29.9
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 29.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 29.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 29.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 29.7
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 29.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 29.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 29.4
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 29.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 29.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 29.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 29.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 29.3
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 29.3
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 29.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 29.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 29.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 29.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 29.2
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 29.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 29.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 29.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 29.0
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 29.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 29.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 29.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 29.0
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 28.9
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 28.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 28.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 28.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 28.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 28.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 28.5
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 28.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 28.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 28.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 28.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 28.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 28.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 28.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 28.0
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 28.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 27.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 27.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 27.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 27.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 27.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 27.5
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 27.4
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 27.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 27.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 27.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 27.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 27.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 27.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 27.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 27.1
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 27.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 27.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 26.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 26.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 26.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 26.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 26.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 26.6
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 26.4
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 26.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 26.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 26.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 25.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 24.9
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 24.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 24.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 24.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 24.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 24.5
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 24.2
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 21.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 21.4
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

153.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 153.2
FF:10176-103C5 60 years, female 153.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.7
Pig sample Sample description nTPM
Putamen
nTPM: 65.7
Samples: 4

Max nTPM: 74.0
Min nTPM: 54.9
Sample A Female 65.0
Sample B Female 54.9
Sample C Male 74.0
Sample D Male 68.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo