BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:49.3 nTPM
HPA Brain:55.0 nTPM
GTEx:49.3 nTPM
FANTOM5:42.2 Scaled Tags Per Million
Pig:68.3 nTPM
Mouse:41.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

CAUDATE - Antibody stainingi
Antibody HPA043671
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 55.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.8
2481 Female, age 94, left hemisphere 49.1
2290 Female, age 72, unknown 46.3
2288 Male, age 75, left hemisphere 45.2
2289 Male, age 61, right hemisphere 44.2
1857 Female, age 85, left hemisphere 42.5
1781 Male, age 74, unknown 42.0
2846 Female, age 79, unknown 41.9
1854 Male, age 80, left hemisphere 38.9
Globus pallidus, externus
nTPM: 54.8
1996 Male, age 80, right hemisphere 63.2
2646 Male, age 61, right hemisphere 59.7
2772 Female, age 79, unknown 56.7
2395 Male, age 75, both hemispheres 49.5
2567 Female, age 72, unknown 44.9
Globus pallidus, internus
nTPM: 55.0
2287 Male, age 75, right hemisphere 59.5
2111 Female, age 85, right hemisphere 59.4
2778 Female, age 91, both hemispheres 57.9
1818 Male, age 74, unknown 54.1
2566 Female, age 72, unknown 52.2
2037 Male, age 80, right hemisphere 51.5
2483 Female, age 94, right hemisphere 50.6
Nucleus accumbens
nTPM: 44.7
2286 Male, age 75, left hemisphere 48.3
2698 Female, age 72, unknown 48.0
2732 Male, age 80, right hemisphere 45.7
1806 Female, age 85, left hemisphere 44.6
2391 Female, age 94, left hemisphere 44.6
1783 Male, age 74, unknown 43.3
2824 Male, age 61, right hemisphere 42.3
1856 Female, age 91, right hemisphere 41.1
Nucleus basalis of Meynert
nTPM: 45.2
2569 Male, age 61, both hemispheres 59.5
2821 Male, age 75, both hemispheres 43.5
2484 Female, age 94, left hemisphere 39.8
2393 Male, age 80, right hemisphere 38.1
Nucleus of the diagonal band
nTPM: 40.2
1812 Female, age 91, both hemispheres 42.4
1979 Male, age 74, unknown 40.5
2195 Female, age 85, both hemispheres 40.2
2775 Male, age 80, right hemisphere 40.2
2029 Male, age 61, right hemisphere 37.8
Putamen
nTPM: 41.3
1937 Female, age 91, right hemisphere 44.2
2482 Female, age 94, left hemisphere 43.8
1829 Male, age 74, unknown 43.0
2647 Male, age 75, left hemisphere 42.9
2466 Female, age 79, unknown 41.2
1838 Male, age 80, right hemisphere 37.6
2489 Female, age 72, unknown 36.5
Septal nuclei
nTPM: 39.3
1960 Male, age 74, unknown 43.0
2059 Female, age 85, both hemispheres 41.2
2031 Female, age 72, unknown 40.8
2199 Male, age 80, right hemisphere 39.2
2394 Male, age 61, left hemisphere 37.3
2629 Female, age 94, right hemisphere 37.3
2009 Female, age 91, both hemispheres 36.1
Stria terminalis, bed nucleus
nTPM: 39.0
1974 Female, age 91, both hemispheres 43.2
2201 Male, age 74, unknown 38.3
2486 Female, age 94, both hemispheres 35.5

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 49.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.7
Samples: 300

Max nTPM: 87.9
Min nTPM: 14.2
Std nTPM: 9.5
Median nTPM: 43.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 87.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 77.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 75.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 73.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 72.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 72.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 70.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 70.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 67.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 67.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 65.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.6
Samples: 285

Max nTPM: 82.6
Min nTPM: 26.1
Std nTPM: 9.5
Median nTPM: 43.4
GTEX-1PWST-0011-R6a-SM-F341Z 70-79 years, male 82.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 77.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 72.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 70.0
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 68.2
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 67.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 67.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 66.2
GTEX-14BIL-0011-R6b-SM-GPRXF 50-59 years, male 65.7
GTEX-148VJ-0011-R6a-SM-H6Q7O 70-79 years, male 64.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 64.4
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Brain - Putamen (basal ganglia)
Average nTPM: 49.3
Samples: 254

Max nTPM: 105.3
Min nTPM: 28.9
Std nTPM: 10.1
Median nTPM: 47.7
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 105.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 91.7
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 85.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 79.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 76.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 74.6
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 74.6
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 73.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 72.9
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 72.3
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 71.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.6
FF:10164-103B2 76 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 37.4
FF:10037-101F1 23-56 years, mixed 37.4
Putamen
Scaled Tags Per Million: 33.5
FF:10176-103C5 60 years, female 33.5
Globus pallidus
Scaled Tags Per Million: 42.2
FF:10175-103C4 60 years, female 51.7
FF:10161-103A8 76 years, female 32.6

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 68.3
Pig sample Sample description nTPM
Caudate
nTPM: 58.6
Samples: 4

Max nTPM: 68.4
Min nTPM: 50.5
Sample A Female 52.5
Sample B Female 63.1
Sample C Male 68.4
Sample D Male 50.5
Putamen
nTPM: 68.3
Samples: 4

Max nTPM: 77.9
Min nTPM: 50.0
Sample A Female 71.1
Sample B Female 50.0
Sample C Male 74.2
Sample D Male 77.9
Septum
nTPM: 58.2
Samples: 4

Max nTPM: 63.0
Min nTPM: 53.2
Sample A Female 60.2
Sample B Female 53.2
Sample C Male 56.4
Sample D Male 63.0
Ventral pallidum
nTPM: 60.3
Samples: 4

Max nTPM: 64.2
Min nTPM: 51.0
Sample A Female 51.0
Sample B Female 64.2
Sample C Male 64.2
Sample D Male 61.8

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 41.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.5
Samples: 4

Max nTPM: 48.8
Min nTPM: 28.6
Sample A Male 40.0
Sample B Male 48.8
Sample C Female 28.6
Sample D Female 32.6
Septum
nTPM: 41.9
Samples: 4

Max nTPM: 46.5
Min nTPM: 36.6
Sample A Male 43.6
Sample B Male 40.8
Sample C Female 46.5
Sample D Female 36.6
Ventral forebrain
nTPM: 40.5
Samples: 4

Max nTPM: 49.4
Min nTPM: 34.0
Sample A Male 42.4
Sample B Male 34.0
Sample C Female 49.4
Sample D Female 36.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
392929 Antisense, RP_040804_01_H11, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.2
392929 Antisense, RP_040804_01_H11, Mouse strain C57BL/6J (56 days, male) 0.2

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