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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.6
nTPM
Monaco:
70.3
nTPM
Schmiedel:
57.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.6
HPA sample
nTPM
gdT-cell nTPM: 12.5
Samples: 6
Max nTPM: 15.2
Min nTPM: 9.4
P10809_1007
9.4
P10809_1022
15.0
P10809_1041
10.0
P10809_1060
12.9
P10809_1077
12.2
P10809_1098
15.2
MAIT T-cell nTPM: 13.2
Samples: 6
Max nTPM: 23.8
Min nTPM: 6.6
P10809_1006
11.8
P10809_1024
10.4
P10809_1043
6.6
P10809_1062
11.6
P10809_1083
15.0
P10809_1097
23.8
Memory CD4 T-cell nTPM: 17.1
Samples: 6
Max nTPM: 21.7
Min nTPM: 12.6
P10809_1014
15.3
P10809_1026
15.4
P10809_1045
12.6
P10809_1064
20.2
P10809_1086
17.5
P10809_1113
21.7
Memory CD8 T-cell nTPM: 15.9
Samples: 5
Max nTPM: 29.2
Min nTPM: 8.0
P10809_1012
11.5
P10809_1027
10.9
P10809_1046
8.0
P10809_1065
19.7
P10809_1111
29.2
Naive CD4 T-cell nTPM: 16.2
Samples: 6
Max nTPM: 20.3
Min nTPM: 10.1
P10809_1015
19.2
P10809_1030
15.3
P10809_1049
10.1
P10809_1068
17.7
P10809_1085
20.3
P10809_1112
14.7
Naive CD8 T-cell nTPM: 12.6
Samples: 6
Max nTPM: 23.0
Min nTPM: 4.7
P10809_1016
9.7
P10809_1031
4.7
P10809_1050
9.1
P10809_1069
16.2
P10809_1087
23.0
P10809_1110
12.8
T-reg nTPM: 33.6
Samples: 6
Max nTPM: 60.6
Min nTPM: 8.5
P10809_1018
26.9
P10809_1037
30.0
P10809_1056
8.5
P10809_1075
39.4
P10809_1094
36.4
P10809_1106
60.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 46.2
Samples: 4
Max nTPM: 60.7
Min nTPM: 23.3
RHH5202_R3573
46.7
RHH5230_R3602
54.1
RHH5259_R3631
23.3
RHH5288_R3660
60.7
Effector memory CD8 T-cell nTPM: 70.3
Samples: 4
Max nTPM: 97.9
Min nTPM: 53.5
RHH5203_R3574
97.9
RHH5231_R3603
53.5
RHH5260_R3632
57.2
RHH5289_R3661
72.7
MAIT T-cell nTPM: 47.3
Samples: 4
Max nTPM: 72.2
Min nTPM: 18.6
RHH5233_R3605
48.8
RHH5205_R3576
72.2
RHH5262_R3634
18.6
RHH5297_R3663
49.5
Memory CD4 T-cell TFH nTPM: 65.7
Samples: 4
Max nTPM: 93.1
Min nTPM: 50.3
RHH5300_R3666
50.3
RHH5236_R3608
62.7
RHH5265_R3637
56.5
RHH5208_R3579
93.1
Memory CD4 T-cell Th1 nTPM: 58.8
Samples: 4
Max nTPM: 87.6
Min nTPM: 23.0
RHH5210_R3581
74.8
RHH5302_R3668
87.6
RHH5238_R3610
23.0
RHH5267_R3639
49.6
Memory CD4 T-cell Th1/Th17 nTPM: 57.8
Samples: 4
Max nTPM: 121.4
Min nTPM: 31.6
RHH5303_R3669
45.0
RHH5211_R3582
121.4
RHH5239_R3611
31.6
RHH5268_R3640
33.2
Memory CD4 T-cell Th17 nTPM: 49.0
Samples: 4
Max nTPM: 105.6
Min nTPM: 12.4
RHH5304_R3670
45.2
RHH5212_R3583
105.6
RHH5240_R3612
32.8
RHH5269_R3641
12.4
Memory CD4 T-cell Th2 nTPM: 64.7
Samples: 4
Max nTPM: 93.7
Min nTPM: 39.7
RHH5305_R3671
39.7
RHH5213_R3584
93.7
RHH5241_R3613
60.6
RHH5270_R3642
64.6
Naive CD4 T-cell nTPM: 45.1
Samples: 4
Max nTPM: 65.2
Min nTPM: 32.7
RHH5306_R3672
46.8
RHH5214_R3585
65.2
RHH5242_R3614
32.7
RHH5271_R3643
35.6
Naive CD8 T-cell nTPM: 36.1
Samples: 4
Max nTPM: 56.3
Min nTPM: 19.0
RHH5201_R3572
56.3
RHH5229_R3601
19.0
RHH5258_R3630
28.0
RHH5287_R3659
41.0
Non-Vd2 gdTCR nTPM: 47.8
Samples: 4
Max nTPM: 79.0
Min nTPM: 22.6
RHH5235_R3607
22.6
RHH5264_R3636
44.5
RHH5207_R3578
79.0
RHH5299_R3665
45.0
T-reg nTPM: 58.8
Samples: 4
Max nTPM: 73.2
Min nTPM: 41.3
RHH5301_R3667
51.2
RHH5237_R3609
69.4
RHH5266_R3638
41.3
RHH5209_R3580
73.2
Terminal effector memory CD4 T-cell nTPM: 44.9
Samples: 2
Max nTPM: 60.9
Min nTPM: 28.8
RHH5243_R3615
28.8
RHH5272_R3644
60.9
Terminal effector memory CD8 T-cell nTPM: 39.0
Samples: 4
Max nTPM: 54.0
Min nTPM: 32.5
RHH5232_R3604
32.5
RHH5204_R3575
36.0
RHH5261_R3633
54.0
RHH5296_R3662
33.3
Vd2 gdTCR nTPM: 54.9
Samples: 4
Max nTPM: 87.4
Min nTPM: 27.7
RHH5234_R3606
33.7
RHH5206_R3577
87.4
RHH5263_R3635
70.9
RHH5298_R3664
27.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
