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  • SUMMARY

  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:139.7 nTPM
FANTOM5:173.9 Scaled Tags Per Million
Pig:112.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003001Antibody CAB000109
Glial cells HighNot detected
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 139.7
Samples: 300

Max nTPM: 382.3
Min nTPM: 43.5
Std nTPM: 43.1
Median nTPM: 134.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 382.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 365.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 301.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 285.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 266.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 265.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 232.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 228.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 227.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 226.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 224.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 217.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 216.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 215.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 212.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 210.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 209.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 207.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 206.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 206.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 204.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 201.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 197.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 196.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 196.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 195.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 194.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 194.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 194.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 193.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 192.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 192.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 192.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 190.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 187.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 186.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 185.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 183.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 182.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 181.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 180.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 180.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 179.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 176.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 176.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 175.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 175.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 174.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 173.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 171.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 169.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 169.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 168.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 165.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 165.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 164.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 164.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 164.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 164.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 163.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 163.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 163.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 163.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 163.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 162.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 162.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 160.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 160.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 160.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 160.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 159.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 159.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 159.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 159.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 159.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 158.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 158.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 158.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 158.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 158.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 157.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 157.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 156.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 156.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 156.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 155.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 154.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 154.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 154.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 154.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 154.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 154.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 154.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 153.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 153.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 153.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 152.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 152.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 151.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 151.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 150.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 150.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 149.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 149.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 148.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 148.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 148.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 147.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 146.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 146.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 146.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 146.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 146.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 146.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 146.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 145.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 145.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 145.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 145.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 145.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 145.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 144.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 143.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 143.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 143.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 143.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 143.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 142.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 142.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 142.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 141.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 141.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 140.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 140.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 140.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 140.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 139.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 139.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 137.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 137.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 136.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 136.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 136.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 136.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 135.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 135.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 135.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 135.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 134.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 134.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 134.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 133.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 133.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 133.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 133.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 132.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 132.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 132.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 132.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 132.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 131.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 131.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 130.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 130.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 130.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 129.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 129.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 129.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 128.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 128.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 128.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 128.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 127.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 127.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 127.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 127.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 127.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 127.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 127.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 126.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 125.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 125.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 125.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 125.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 125.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 125.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 125.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 125.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 124.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 124.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 123.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 122.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 122.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 121.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 121.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 121.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 120.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 120.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 119.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 118.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 118.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 118.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 118.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 117.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 117.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 117.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 115.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 115.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 114.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 114.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 114.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 113.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 113.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 113.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 113.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 113.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 113.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 113.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 113.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 112.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 112.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 111.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 111.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 110.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 109.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 108.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 108.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 108.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 108.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 107.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 107.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 107.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 107.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 107.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 107.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 106.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 106.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 106.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 106.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 105.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 105.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 105.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 104.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 104.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 104.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 103.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 103.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 103.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 102.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 99.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 99.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 99.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 98.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 98.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 98.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 97.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 97.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 97.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 97.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 96.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 96.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 96.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 95.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 95.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 94.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 94.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 92.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 92.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 92.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 91.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 90.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 89.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 89.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 89.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 88.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 88.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 87.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 87.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 87.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 87.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 86.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 84.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 84.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 83.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 83.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 82.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 82.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 82.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 81.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 80.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 77.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 77.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 76.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 66.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 64.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 62.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 43.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

173.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 173.9
FF:10164-103B2 76 years, female 173.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.7
Pig sample Sample description nTPM
Caudate
nTPM: 112.7
Samples: 4

Max nTPM: 132.8
Min nTPM: 81.6
Sample A Female 81.6
Sample B Female 132.8
Sample C Male 126.0
Sample D Male 110.3

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