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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • PRDX1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:405.9 nTPM
FANTOM5:333.4 Scaled Tags Per Million
Pig:59.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007730Antibody CAB004682
Glial cells MediumMedium
Neuronal cells Not detectedLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

405.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 405.9
Samples: 300

Max nTPM: 817.7
Min nTPM: 205.0
Std nTPM: 116.9
Median nTPM: 392.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 817.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 793.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 792.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 750.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 731.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 720.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 671.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 670.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 662.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 659.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 657.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 630.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 628.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 613.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 604.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 601.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 600.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 593.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 593.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 590.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 589.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 584.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 583.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 577.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 572.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 571.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 568.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 567.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 565.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 563.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 563.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 563.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 555.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 553.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 552.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 548.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 547.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 541.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 539.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 537.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 537.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 535.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 532.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 531.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 527.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 524.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 522.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 521.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 520.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 518.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 517.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 514.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 514.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 509.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 508.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 505.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 504.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 503.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 503.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 503.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 502.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 501.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 501.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 500.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 498.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 497.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 496.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 494.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 487.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 484.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 484.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 482.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 480.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 479.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 477.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 476.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 473.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 473.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 472.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 469.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 468.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 467.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 467.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 467.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 464.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 463.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 463.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 462.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 461.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 457.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 457.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 456.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 455.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 452.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 452.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 451.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 451.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 451.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 448.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 447.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 445.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 445.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 445.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 444.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 443.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 443.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 441.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 441.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 441.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 440.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 440.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 439.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 437.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 435.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 432.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 432.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 430.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 427.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 427.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 427.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 425.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 421.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 420.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 420.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 418.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 418.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 417.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 413.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 413.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 413.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 412.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 412.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 412.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 409.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 408.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 408.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 408.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 407.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 406.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 406.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 399.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 398.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 397.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 397.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 396.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 396.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 394.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 394.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 393.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 393.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 392.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 392.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 387.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 386.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 385.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 384.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 383.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 383.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 383.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 382.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 381.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 381.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 380.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 380.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 378.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 378.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 376.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 375.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 374.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 373.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 373.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 371.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 371.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 370.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 369.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 367.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 365.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 363.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 362.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 360.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 358.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 358.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 357.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 356.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 356.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 355.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 354.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 354.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 354.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 353.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 352.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 348.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 347.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 347.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 346.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 345.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 344.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 341.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 341.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 340.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 340.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 338.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 337.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 337.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 336.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 336.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 335.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 334.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 331.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 328.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 328.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 327.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 326.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 324.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 323.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 323.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 323.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 323.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 322.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 321.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 319.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 319.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 318.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 317.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 316.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 315.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 313.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 313.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 312.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 308.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 304.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 303.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 302.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 302.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 302.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 300.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 299.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 298.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 297.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 297.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 295.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 294.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 294.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 294.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 292.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 292.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 291.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 290.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 287.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 285.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 284.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 284.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 282.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 282.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 281.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 280.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 279.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 277.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 277.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 275.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 274.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 274.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 272.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 272.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 270.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 270.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 267.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 266.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 266.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 266.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 266.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 265.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 264.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 264.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 262.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 262.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 261.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 260.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 259.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 258.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 256.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 256.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 254.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 252.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 251.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 251.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 246.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 246.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 243.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 242.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 239.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 234.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 231.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 231.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 228.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 226.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 219.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 213.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 205.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 205.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

333.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 333.4
FF:10164-103B2 76 years, female 333.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.9
Pig sample Sample description nTPM
Caudate
nTPM: 60.0
Samples: 4

Max nTPM: 68.4
Min nTPM: 52.8
Sample A Female 53.0
Sample B Female 65.7
Sample C Male 68.4
Sample D Male 52.8

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