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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1725.4 nTPM
GTEx:1725.4 nTPM
FANTOM5:71.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA054510Antibody HPA057793
Squamous epithelial cells MediumHigh




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1725.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1725.4
Samples: 170

Max nTPM: 4179.0
Min nTPM: 847.4
Std nTPM: 511.1
Median nTPM: 1637.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4179.0
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3805.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3439.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3217.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3110.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2857.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2833.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2734.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2541.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2521.3
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2503.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2475.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2442.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2408.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2309.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2302.1
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2279.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2275.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2256.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2245.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2239.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2227.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2224.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2190.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2184.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2141.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2122.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2109.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2106.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2104.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2098.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2087.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2087.4
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2081.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2073.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2069.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2049.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2045.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2040.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2029.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1994.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1987.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1942.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1938.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1935.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1916.4
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1916.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1909.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1905.3
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1895.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1879.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1867.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1839.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1835.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1826.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1822.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1816.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1809.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1807.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1805.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1803.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1799.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1793.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1787.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1785.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1783.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1759.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1752.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1751.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1751.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1748.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1741.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1733.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1719.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 1702.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1692.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1682.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1681.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1669.5
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1669.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1668.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1661.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1654.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1650.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1647.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1628.2
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1624.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1620.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1619.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1612.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1611.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1604.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1600.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1586.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1586.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1581.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1579.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1574.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1561.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1560.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1559.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1556.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1549.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1548.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1544.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1521.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1499.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1494.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1493.8
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1483.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1477.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1474.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1465.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1465.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1451.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1449.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1448.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1445.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1444.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1438.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1432.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1431.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1430.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1419.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1417.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1414.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1413.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1391.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1389.8
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1376.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1375.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1369.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1366.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1359.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1323.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1318.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1311.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1305.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1304.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1297.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1288.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1284.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1269.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1268.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1261.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1257.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1256.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1221.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1220.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1217.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1193.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1187.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1173.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1168.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 1164.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1161.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1141.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1136.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1125.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1125.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1100.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1092.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1085.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1077.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1059.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1009.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1005.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 983.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 939.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 847.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 71.0
FF:10204-103F6 68 years, female 71.0

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