We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
25.0
nTPM
HPA Brain:
32.6
nTPM
GTEx:
25.0
nTPM
FANTOM5:
51.0
Scaled Tags Per Million
Pig:
39.3
nTPM
Mouse:
56.7
nTPM
Allen mouse:
1.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA027095
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 29.5
2621
Female, age 67, right hemisphere
34.5
1898
Male, age 80, left hemisphere
32.5
1855
Male, age 76, left hemisphere
30.6
2529
Female, age 94, left hemisphere
29.5
1911
Female, age 85, right hemisphere
26.6
2148
Female, age 91, left hemisphere
23.4
Dentate gyrus nTPM: 27.5
2528
Male, age 74, both hemispheres
30.1
2010
Male, age 76, both hemispheres
30.0
2530
Female, age 94, left hemisphere
27.0
1927
Female, age 91, both hemispheres
26.9
2246
Female, age 85, both hemispheres
26.1
2531
Female, age 67, both hemispheres
24.9
Entorhinal gyrus nTPM: 26.3
1938
Female, age 85, left hemisphere
31.0
2117
Female, age 91, right hemisphere
29.4
1787
Male, age 76, left hemisphere
27.0
2764
Male, age 80, right hemisphere
24.6
2613
Female, age 94, left hemisphere
23.5
2686
Male, age 75, right hemisphere
22.2
Hippocampus, CA1 nTPM: 28.0
2749
Male, age 80, left hemisphere
35.3
1873
Female, age 85, both hemispheres
27.6
2045
Male, age 76, both hemispheres
27.6
2527
Male, age 74, both hemispheres
26.9
2082
Female, age 91, right hemisphere
22.7
Hippocampus, CA2 nTPM: 27.8
1892
Male, age 76, both hemispheres
30.8
1963
Male, age 80, left hemisphere
29.9
1940
Female, age 85, left hemisphere
29.0
2249
Male, age 74, both hemispheres
27.6
2437
Female, age 94, left hemisphere
27.2
2113
Female, age 91, right hemisphere
22.4
Hippocampus, CA3 nTPM: 28.5
1867
Male, age 76, both hemispheres
32.5
2137
Male, age 80, left hemisphere
31.2
1891
Female, age 85, both hemispheres
31.1
2436
Male, age 74, both hemispheres
30.8
2620
Female, age 94, left hemisphere
26.5
2861
Female, age 67, both hemispheres
18.7
Parahippocampal cortex nTPM: 28.9
1850
Male, age 80, both hemispheres
36.3
2532
Female, age 72, left hemisphere
33.0
2018
Male, age 76, both hemispheres
32.4
2693
Female, age 94, both hemispheres
31.1
1933
Female, age 85, both hemispheres
28.2
2250
Female, age 67, right hemisphere
26.9
2692
Male, age 74, both hemispheres
26.9
2245
Female, age 91, both hemispheres
26.1
1990
Female, age 91, right hemisphere
25.7
2622
Female, age 67, right hemisphere
22.2
Perirhinal gyrus nTPM: 32.6
1841
Female, age 85, right hemisphere
35.7
1794
Male, age 80, right hemisphere
32.9
2521
Female, age 94, right hemisphere
32.4
1847
Female, age 91, left hemisphere
32.3
2848
Male, age 76, right hemisphere
29.8
Subiculum nTPM: 32.3
2438
Female, age 94, left hemisphere
45.1
1901
Male, age 80, both hemispheres
35.0
2042
Male, age 76, both hemispheres
34.1
1977
Female, age 85, both hemispheres
30.7
2619
Male, age 74, both hemispheres
25.3
2729
Female, age 91, right hemisphere
23.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 25.0
Samples: 197
Max nTPM: 46.7
Min nTPM: 15.2
Std nTPM: 5.3
Median nTPM: 24.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
46.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
40.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
38.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
38.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
36.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
36.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
36.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
35.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
35.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
34.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
34.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
34.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
33.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
33.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
33.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
33.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
32.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
32.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
32.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
32.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
32.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
32.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
32.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
31.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
31.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
31.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
31.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
31.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
30.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
30.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
30.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
30.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
30.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
29.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
29.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
29.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
29.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
29.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
28.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
28.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
28.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
28.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
28.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
28.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
28.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
28.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
28.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
28.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
28.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
28.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
27.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
27.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
27.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
27.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
27.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
27.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
27.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
27.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
27.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
27.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
27.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
27.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
27.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
27.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
27.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
26.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
26.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
26.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
26.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
26.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
26.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
26.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
26.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
26.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
26.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
26.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
26.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
26.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
25.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
25.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
25.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
25.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
25.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
25.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
25.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
25.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
25.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
25.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
25.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
25.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
25.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
24.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
24.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
24.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
24.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
24.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
24.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
24.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
24.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
24.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
24.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
24.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
24.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
24.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
24.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
24.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
24.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
24.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
23.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
23.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
23.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
23.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
23.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
23.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
23.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
23.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
23.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
23.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
23.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
23.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
22.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
22.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
22.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
22.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
22.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
22.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
22.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
22.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
22.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
22.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
22.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
22.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
22.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
22.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
22.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
22.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
22.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
21.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
21.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
21.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
21.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
21.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
21.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
21.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
21.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
20.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
20.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
20.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
20.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
20.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
20.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
20.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
20.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
20.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
20.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
20.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
20.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
20.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
20.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
19.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
19.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
19.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
19.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
19.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
19.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
19.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
19.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
19.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
19.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
19.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
19.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
19.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
19.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
18.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
18.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
18.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
18.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
18.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
18.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
18.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
18.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
18.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
18.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
18.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
17.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
17.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
17.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
17.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
17.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
16.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
16.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
16.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
16.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
16.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
16.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
15.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
15.2
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 50.6
Samples: 4
Max nTPM: 60.0
Min nTPM: 39.2
Sample A
Male
48.4
Sample B
Male
60.0
Sample C
Female
54.6
Sample D
Female
39.2
Hippocampal formation nTPM: 56.7
Samples: 4
Max nTPM: 65.9
Min nTPM: 49.0
Sample A
Male
65.9
Sample B
Male
52.2
Sample C
Female
49.0
Sample D
Female
59.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.