We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SPARC
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SPARC
TISSUE PRIMARY DATA PUTAMEN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:401.1 nTPM
GTEx:208.0 nTPM
FANTOM5:384.9 Scaled Tags Per Million
Pig:1247.9 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

401.1
Sample id Sample description nTPM
Putamen
nTPM: 401.1
1829 Male, age 74, unknown 511.3
2482 Female, age 94, left hemisphere 508.2
1838 Male, age 80, right hemisphere 457.6
2489 Female, age 72, unknown 419.1
2466 Female, age 79, unknown 336.2
1937 Female, age 91, right hemisphere 310.8
2647 Male, age 75, left hemisphere 264.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.0
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 208.0
Samples: 254

Max nTPM: 886.3
Min nTPM: 79.8
Std nTPM: 95.2
Median nTPM: 184.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 886.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 642.2
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 604.6
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 583.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 427.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 411.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 394.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 383.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 378.9
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 374.6
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 371.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 362.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 354.2
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 350.0
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 342.4
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 342.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 327.4
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 324.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 323.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 322.2
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 320.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 316.6
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 313.3
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 311.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 311.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 311.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 309.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 308.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 308.6
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 308.1
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 301.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 299.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 298.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 295.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 294.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 292.3
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 291.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 288.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 288.8
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 285.7
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 281.0
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 279.9
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 278.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 278.7
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 278.6
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 278.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 278.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 277.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 276.9
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 276.4
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 276.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 274.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 272.8
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 271.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 269.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 268.6
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 264.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 262.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 262.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 261.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 258.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 257.6
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 255.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 254.8
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 253.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 253.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 252.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 252.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 251.8
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 251.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 249.0
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 248.7
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 248.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 248.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 248.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 247.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 243.0
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 242.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 240.3
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 240.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 239.0
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 234.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 232.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 232.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 232.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 229.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 228.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 227.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 225.8
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 224.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 224.7
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 220.8
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 219.2
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 218.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 218.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 216.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 215.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 214.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 212.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 211.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 210.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 208.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 207.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 206.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 206.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 205.7
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 204.6
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 204.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 204.2
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 201.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 201.2
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 201.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 201.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 198.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 197.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 195.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 195.1
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 194.5
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 194.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 193.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 190.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 188.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 186.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 186.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 186.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 185.4
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 184.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 184.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 182.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 181.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 181.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 181.4
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 180.8
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 180.4
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 179.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 179.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 176.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 176.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 176.8
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 176.8
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 176.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 175.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 174.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 172.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 172.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 171.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 171.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 170.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 169.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 169.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 169.2
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 169.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 168.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 168.2
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 166.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 165.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 163.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 163.4
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 163.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 162.4
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 161.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 161.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 159.4
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 159.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 159.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 159.2
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 159.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 156.9
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 156.5
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 155.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 155.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 155.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 155.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 155.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 155.2
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 152.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 151.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 151.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 151.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 150.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 149.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 149.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 148.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 148.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 148.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 147.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 147.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 147.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 145.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 144.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 144.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 144.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 143.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 142.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 141.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 141.1
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 141.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 137.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 137.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 136.8
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 136.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 136.1
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 134.9
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 133.5
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 133.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 133.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 132.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 132.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 130.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 130.3
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 129.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 128.2
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 128.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 128.0
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 126.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 126.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 125.3
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 124.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 124.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 124.4
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 124.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 123.3
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 122.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 122.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 121.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 120.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 119.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 118.0
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 114.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 114.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 114.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 114.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 113.2
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 113.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 112.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 111.1
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 110.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 110.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 109.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 109.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 108.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 108.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 105.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 102.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 101.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 99.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 95.6
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 92.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 91.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 88.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 87.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 84.4
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 82.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 79.8
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

384.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 384.9
FF:10176-103C5 60 years, female 384.9

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1247.9
Pig sample Sample description nTPM
Putamen
nTPM: 1248.0
Samples: 4

Max nTPM: 1896.6
Min nTPM: 881.6
Sample A Female 1896.6
Sample B Female 881.6
Sample C Male 1136.1
Sample D Male 1077.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo