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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
14.5
nTPM
HPA Brain:
14.3
nTPM
GTEx:
14.5
nTPM
FANTOM5:
20.7
Scaled Tags Per Million
Pig:
6.7
nTPM
Mouse:
11.4
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 12.9
2411
Female, age 72, unknown
16.0
2666
Male, age 74, left hemisphere
15.8
1870
Female, age 42, unknown
15.1
1830
Male, age 51, unknown
14.8
1833
Male, age 53, unknown
14.7
2019
Male, age 18, unknown
12.3
2828
Female, age 72, unknown
12.3
2219
Male, age 76, both hemispheres
10.8
1827
Male, age 72, unknown
8.9
2586
Male, age 75, left hemisphere
8.5
Dorsal raphe nucleus nTPM: 9.8
2750
Male, age 76, both hemispheres
11.8
1828
Male, age 53, unknown
10.1
2298
Female, age 72, unknown
9.9
2016
Female, age 72, unknown
8.9
2047
Male, age 72, unknown
8.6
Inferior colliculus nTPM: 9.6
1848
Female, age 42, unknown
9.9
2097
Female, age 72, unknown
9.7
2849
Male, age 72, unknown
9.7
1890
Male, age 53, unknown
9.3
Median raphe nucleus nTPM: 10.1
2220
Male, age 76, midline
10.1
Periaquaductal grey, anterior nTPM: 9.3
2502
Female, age 75, unknown
10.8
1947
Male, age 18, unknown
10.3
1795
Male, age 51, unknown
7.0
Periaquaductal grey, dorsal nTPM: 7.5
2464
Female, age 72, unknown
9.4
1831
Male, age 72, unknown
8.7
2850
Male, age 76, both hemispheres
6.3
1840
Male, age 53, unknown
5.7
Periaquaductal grey, lateral nTPM: 7.7
2272
Male, age 74, both hemispheres
8.9
2053
Male, age 18, unknown
8.8
2140
Male, age 76, both hemispheres
5.5
Pretectal area nTPM: 8.6
1815
Male, age 53, unknown
10.6
2825
Male, age 18, unknown
10.3
2316
Male, age 76, right hemisphere
9.0
2407
Male, age 75, both hemispheres
9.0
1817
Female, age 42, unknown
8.9
2667
Female, age 75, unknown
8.7
2224
Female, age 72, unknown
8.6
2007
Male, age 72, unknown
8.4
2273
Male, age 74, both hemispheres
8.3
1944
Female, age 72, unknown
6.8
1816
Male, age 51, unknown
6.4
Red nucleus nTPM: 14.3
1904
Male, age 53, unknown
17.7
1865
Male, age 51, unknown
17.4
1821
Female, age 72, unknown
16.3
1954
Female, age 42, unknown
15.5
2769
Male, age 72, unknown
15.0
2227
Male, age 72, unknown
14.8
2785
Male, age 18, unknown
13.4
2823
Male, age 76, right hemisphere
13.1
2588
Male, age 74, left hemisphere
13.0
2503
Female, age 72, unknown
12.8
2584
Male, age 75, left hemisphere
12.3
2725
Female, age 75, unknown
10.2
Substantia nigra nTPM: 10.1
2583
Male, age 75, right hemisphere
12.5
2590
Female, age 75, unknown
11.3
1851
Male, age 51, unknown
11.1
2409
Female, age 72, unknown
10.7
2699
Male, age 18, unknown
10.2
1889
Female, age 72, unknown
10.0
1941
Male, age 53, unknown
9.4
2665
Male, age 74, both hemispheres
9.1
2241
Male, age 72, unknown
8.8
1916
Female, age 42, unknown
8.2
Superior colliculus nTPM: 10.9
1913
Female, age 42, unknown
17.0
1995
Male, age 72, unknown
15.0
2587
Male, age 74, left hemisphere
11.8
1839
Male, age 51, unknown
11.5
2668
Female, age 75, unknown
10.9
1895
Male, age 76, right hemisphere
10.7
1796
Male, age 53, unknown
9.0
2087
Female, age 72, unknown
7.9
2664
Male, age 75, both hemispheres
7.6
2261
Male, age 18, unknown
7.2
Ventral tegmental area nTPM: 10.7
2223
Female, age 72, unknown
16.0
2410
Female, age 72, unknown
12.0
1942
Male, age 51, unknown
10.3
1915
Female, age 42, unknown
9.2
2021
Male, age 53, unknown
9.2
2218
Male, age 76, both hemispheres
7.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 14.5
Samples: 139
Max nTPM: 58.0
Min nTPM: 3.2
Std nTPM: 7.2
Median nTPM: 12.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
58.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
39.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
34.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
33.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
30.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
27.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
27.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
27.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
25.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
25.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
24.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
23.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
23.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
23.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
22.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
22.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
22.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
21.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
20.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
20.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
20.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
19.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
19.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
19.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
18.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
18.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
18.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
18.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
18.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
17.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
17.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
17.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
17.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
17.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
16.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
16.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
16.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
16.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
16.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
16.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
16.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
16.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
15.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
15.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
15.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
15.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
15.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
15.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
15.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
14.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
14.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
14.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
14.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
14.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
13.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
13.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
13.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
13.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
13.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
13.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
12.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
12.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
12.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
12.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
12.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
12.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
12.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
11.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
11.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
11.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
11.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
11.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
11.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
11.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
11.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
11.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
11.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
11.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
11.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
11.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
10.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
10.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
10.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
10.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
10.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
10.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
10.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
10.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
10.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
9.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
9.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
9.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
9.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
9.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
9.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
8.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
8.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
8.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
8.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
8.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
8.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
8.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
8.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
8.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
8.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
8.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
7.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
7.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
7.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
7.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
7.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
7.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
7.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
7.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
7.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
6.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
6.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
5.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
5.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
3.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 11.4
Samples: 4
Max nTPM: 12.3
Min nTPM: 10.6
Sample A
Male
12.3
Sample B
Male
11.5
Sample C
Female
10.6
Sample D
Female
11.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.