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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
44.4
nTPM
HPA Brain:
40.4
nTPM
GTEx:
44.4
nTPM
FANTOM5:
98.0
Scaled Tags Per Million
Pig:
68.8
nTPM
Mouse:
97.5
nTPM
Allen mouse:
8.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA056981
Antibody CAB012986
Glial cells
Low
High
Neuronal cells
Not detected
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 39.1
1898
Male, age 80, left hemisphere
50.8
1855
Male, age 76, left hemisphere
40.1
1911
Female, age 85, right hemisphere
37.8
2529
Female, age 94, left hemisphere
37.7
2148
Female, age 91, left hemisphere
35.4
2621
Female, age 67, right hemisphere
32.6
Dentate gyrus nTPM: 33.4
1927
Female, age 91, both hemispheres
41.5
2010
Male, age 76, both hemispheres
36.4
2530
Female, age 94, left hemisphere
33.8
2528
Male, age 74, both hemispheres
32.7
2246
Female, age 85, both hemispheres
29.0
2531
Female, age 67, both hemispheres
27.0
Entorhinal gyrus nTPM: 33.6
1938
Female, age 85, left hemisphere
44.1
2764
Male, age 80, right hemisphere
39.0
2117
Female, age 91, right hemisphere
37.1
1787
Male, age 76, left hemisphere
31.6
2686
Male, age 75, right hemisphere
29.9
2613
Female, age 94, left hemisphere
19.7
Hippocampus, CA1 nTPM: 40.4
2749
Male, age 80, left hemisphere
56.6
1873
Female, age 85, both hemispheres
43.6
2045
Male, age 76, both hemispheres
36.1
2527
Male, age 74, both hemispheres
34.9
2082
Female, age 91, right hemisphere
30.5
Hippocampus, CA2 nTPM: 40.0
1892
Male, age 76, both hemispheres
50.5
1963
Male, age 80, left hemisphere
46.0
2249
Male, age 74, both hemispheres
45.3
1940
Female, age 85, left hemisphere
36.9
2113
Female, age 91, right hemisphere
32.3
2437
Female, age 94, left hemisphere
29.1
Hippocampus, CA3 nTPM: 38.0
2137
Male, age 80, left hemisphere
49.0
1867
Male, age 76, both hemispheres
47.4
1891
Female, age 85, both hemispheres
40.3
2436
Male, age 74, both hemispheres
37.2
2620
Female, age 94, left hemisphere
27.4
2861
Female, age 67, both hemispheres
26.8
Parahippocampal cortex nTPM: 33.2
1933
Female, age 85, both hemispheres
42.3
1850
Male, age 80, both hemispheres
41.0
2250
Female, age 67, right hemisphere
37.2
2245
Female, age 91, both hemispheres
35.8
1990
Female, age 91, right hemisphere
33.6
2018
Male, age 76, both hemispheres
31.0
2692
Male, age 74, both hemispheres
29.9
2532
Female, age 72, left hemisphere
29.0
2693
Female, age 94, both hemispheres
26.8
2622
Female, age 67, right hemisphere
25.5
Perirhinal gyrus nTPM: 35.6
1847
Female, age 91, left hemisphere
40.9
1794
Male, age 80, right hemisphere
39.4
1841
Female, age 85, right hemisphere
38.7
2521
Female, age 94, right hemisphere
31.6
2848
Male, age 76, right hemisphere
27.0
Subiculum nTPM: 33.0
1901
Male, age 80, both hemispheres
39.8
2042
Male, age 76, both hemispheres
37.9
1977
Female, age 85, both hemispheres
35.5
2729
Female, age 91, right hemisphere
31.7
2619
Male, age 74, both hemispheres
27.8
2438
Female, age 94, left hemisphere
25.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 44.4
Samples: 197
Max nTPM: 115.4
Min nTPM: 15.3
Std nTPM: 11.8
Median nTPM: 43.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
115.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
100.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
88.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
81.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
78.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
70.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
67.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
61.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
60.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
60.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
59.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
58.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
58.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
56.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
56.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
56.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
55.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
54.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
54.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
54.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
54.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
54.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
54.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
54.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
53.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
52.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
52.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
52.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
52.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
52.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
52.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
52.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
51.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
51.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
51.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
51.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
51.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
50.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
50.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
50.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
50.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
50.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
50.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
50.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
49.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
49.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
49.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
49.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
49.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
49.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
49.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
48.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
48.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
48.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
48.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
48.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
48.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
48.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
48.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
48.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
47.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
47.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
47.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
47.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
47.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
47.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
47.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
47.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
46.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
46.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
46.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
46.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
46.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
46.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
46.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
46.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
46.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
46.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
46.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
46.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
46.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
46.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
46.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
45.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
45.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
45.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
45.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
45.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
45.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
45.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
45.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
44.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
44.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
44.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
44.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
44.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
44.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
44.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
43.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
43.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
43.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
43.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
43.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
43.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
43.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
43.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
43.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
43.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
43.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
43.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
43.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
42.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
42.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
42.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
42.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
42.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
42.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
42.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
42.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
42.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
42.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
41.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
41.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
41.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
41.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
41.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
41.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
41.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
41.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
40.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
40.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
40.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
40.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
40.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
40.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
39.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
39.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
39.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
39.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
39.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
39.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
39.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
39.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
38.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
38.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
38.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
38.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
37.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
37.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
37.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
36.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
36.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
36.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
35.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
35.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
35.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
35.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
35.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
35.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
35.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
34.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
34.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
34.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
34.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
34.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
34.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
34.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
34.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
34.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
33.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
33.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
33.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
33.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
33.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
32.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
32.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
31.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
31.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
31.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
30.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
30.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
30.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
29.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
29.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
29.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
29.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
29.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
28.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
27.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
25.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
24.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
24.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
24.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
20.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
18.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
15.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 89.1
Samples: 4
Max nTPM: 92.6
Min nTPM: 85.7
Sample A
Male
85.7
Sample B
Male
90.9
Sample C
Female
92.6
Sample D
Female
87.3
Hippocampal formation nTPM: 97.6
Samples: 4
Max nTPM: 106.6
Min nTPM: 92.2
Sample A
Male
106.6
Sample B
Male
92.2
Sample C
Female
97.2
Sample D
Female
94.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.