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  • CD81
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:520.0 nTPM
HPA Brain:553.2 nTPM
GTEx:520.0 nTPM
FANTOM5:521.2 Scaled Tags Per Million
Pig:336.8 nTPM
Mouse:371.1 nTPM
Allen mouse:10.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

553.2
Sample id Sample description nTPM
Amygdala
nTPM: 553.2
2695 Female, age 67, right hemisphere 691.4
1987 Female, age 91, left hemisphere 609.6
2814 Male, age 76, right hemisphere 539.2
2514 Male, age 75, right hemisphere 480.6
2517 Female, age 94, left hemisphere 445.1
Basal amygdala
nTPM: 409.6
2609 Male, age 75, right hemisphere 485.5
1955 Male, age 76, both hemispheres 476.4
2110 Male, age 80, left hemisphere 453.5
2243 Female, age 91, right hemisphere 401.2
2685 Female, age 94, left hemisphere 354.2
2827 Female, age 67, right hemisphere 286.9
Central amygdala
nTPM: 499.3
2515 Male, age 75, right hemisphere 599.9
1905 Male, age 76, both hemispheres 574.4
2826 Female, age 94, left hemisphere 527.2
2701 Female, age 91, right hemisphere 401.6
2239 Male, age 80, left hemisphere 393.6
Corticomedial amygdala
nTPM: 394.8
2428 Male, age 75, right hemisphere 524.2
2242 Female, age 91, right hemisphere 454.3
2829 Male, age 80, left hemisphere 405.5
2240 Male, age 76, both hemispheres 389.0
2429 Female, age 94, left hemisphere 331.1
2535 Female, age 67, right hemisphere 264.7
Lateral amygdala
nTPM: 449.1
1883 Male, age 76, both hemispheres 497.3
2516 Male, age 75, right hemisphere 484.1
2256 Male, age 80, left hemisphere 477.8
2534 Female, age 94, left hemisphere 453.1
2255 Female, age 91, right hemisphere 419.4
2830 Female, age 67, right hemisphere 362.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

520.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 520.0
Samples: 181

Max nTPM: 1208.0
Min nTPM: 269.5
Std nTPM: 160.4
Median nTPM: 490.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1208.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 999.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 988.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 985.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 940.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 925.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 879.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 867.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 844.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 813.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 811.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 804.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 797.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 792.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 780.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 780.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 779.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 774.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 759.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 752.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 722.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 701.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 696.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 688.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 685.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 678.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 675.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 670.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 666.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 657.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 654.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 652.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 636.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 635.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 634.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 633.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 621.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 617.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 613.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 602.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 597.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 596.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 594.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 590.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 589.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 586.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 586.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 585.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 585.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 581.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 576.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 574.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 572.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 564.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 564.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 563.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 562.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 560.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 559.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 559.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 554.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 553.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 553.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 549.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 543.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 543.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 542.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 538.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 538.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 528.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 524.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 523.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 519.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 515.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 515.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 514.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 513.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 513.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 509.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 508.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 507.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 503.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 502.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 500.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 499.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 494.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 494.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 492.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 491.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 491.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 490.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 488.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 487.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 485.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 484.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 484.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 481.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 480.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 478.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 475.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 470.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 467.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 465.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 464.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 462.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 459.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 456.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 456.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 455.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 447.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 443.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 443.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 442.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 441.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 439.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 439.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 438.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 437.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 436.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 435.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 435.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 434.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 429.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 429.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 429.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 427.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 426.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 422.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 419.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 418.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 418.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 413.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 412.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 411.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 407.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 406.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 405.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 405.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 402.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 402.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 400.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 400.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 399.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 397.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 394.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 392.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 389.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 388.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 387.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 385.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 382.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 381.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 381.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 378.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 376.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 373.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 371.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 360.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 358.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 358.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 354.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 351.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 349.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 348.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 339.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 338.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 337.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 334.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 333.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 332.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 327.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 318.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 316.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 311.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 310.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 302.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 301.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 287.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 275.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 269.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 269.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

521.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 521.2
FF:10151-102I7 76 years, female 521.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.8
Pig sample Sample description nTPM
Amygdala
nTPM: 336.8
Samples: 4

Max nTPM: 414.3
Min nTPM: 289.9
Sample A Female 414.3
Sample B Female 310.7
Sample C Male 289.9
Sample D Male 332.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 371.1
Samples: 4

Max nTPM: 400.1
Min nTPM: 349.6
Sample A Male 367.9
Sample B Male 349.6
Sample C Female 400.1
Sample D Female 366.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
68269526 Antisense, RP_041129_01_G04, Mouse strain C57BL/6J (56 days, male) 11.5
227 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 9.0
226 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 8.2

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