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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
Brain methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:687.1 nTPM
GTEx:687.1 nTPM
FANTOM5:229.6 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

687.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 687.1
Samples: 105

Max nTPM: 1056.5
Min nTPM: 414.3
Std nTPM: 125.3
Median nTPM:
405_1 91 years, male 1056.5
526_1 61 years, male 949.9
518_1 75 years, female 937.9
375_1 74 years, female 930.8
386_1 76 years, male 919.9
322_1 76 years, male 914.1
229_1 69 years, female 912.8
414_1 84 years, female 893.1
246_1 77 years, male 881.9
237_1 82 years, male 876.6
251_1 78 years, male 853.6
377_1 82 years, female 839.1
321_1 62 years, female 829.8
389_1 86 years, female 814.8
6_1 73 years, female 814.2
425_1 59 years, female 809.6
352_1 62 years, male 807.9
217_1 76 years, male 807.8
324_1 76 years, male 805.4
172_1 72 years, female 789.7
316_1 62 years, male 789.4
415_1 77 years, female 785.9
406_1 79 years, male 771.3
379_1 60 years, male 770.2
81_1 67 years, male 769.3
266_1 85 years, male 763.1
347_1 72 years, male 761.0
189_1 76 years, male 757.5
319_1 81 years, male 747.2
468_1 89 years, male 745.8
126_1 63 years, male 745.3
348_1 84 years, male 741.3
117_1 61 years, male 739.7
490_1 67 years, female 732.5
447_1 81 years, male 728.7
413_1 59 years, female 728.3
9_1 66 years, female 728.2
318_1 68 years, male 727.0
142_1 61 years, female 725.7
35_1 74 years, female 724.8
466_1 57 years, female 721.6
376_1 75 years, female 720.2
480_1 63 years, male 719.8
18_1 88 years, male 718.8
313_1 79 years, female 712.6
315_1 62 years, female 707.3
320_1 89 years, female 701.8
32_1 67 years, male 698.1
218_1 71 years, female 688.4
396_1 62 years, male 686.5
43_1 64 years, female 683.8
291_1 76 years, male 680.4
254_1 77 years, female 677.6
243_1 75 years, male 673.4
286_1 68 years, female 670.5
292_1 71 years, male 668.4
495_1 57 years, female 668.1
499_1 55 years, female 667.0
163_1 78 years, male 666.4
404_1 82 years, female 665.7
153_1 70 years, female 663.5
162_1 79 years, female 663.3
177_1 74 years, male 659.9
355_1 70 years, female 659.6
265_1 87 years, male 656.2
354_1 81 years, female 652.6
311_1 78 years, male 652.0
503_1 68 years, male 648.6
307_1 66 years, female 645.4
149_1 88 years, male 642.3
115_1 83 years, male 635.7
173_1 67 years, male 633.5
2_1 77 years, female 631.2
335_1 73 years, female 629.5
384_1 83 years, male 624.3
99_1 64 years, male 621.1
139_1 64 years, female 612.1
137_1 83 years, male 610.5
353_1 82 years, female 606.5
145_1 84 years, male 597.5
517_1 88 years, male 597.5
349_1 83 years, male 591.7
356_1 87 years, female 589.4
264_1 73 years, female 586.5
4_1 88 years, female 584.6
506_1 65 years, male 582.3
491_1 89 years, female 580.6
501_1 88 years, male 579.9
120_1 70 years, female 562.7
350_1 84 years, female 557.8
351_1 91 years, male 556.8
17_1 71 years, male 551.6
394_1 75 years, female 540.1
288_1 66 years, female 534.9
293_1 68 years, female 531.5
89_1 63 years, male 519.0
317_1 60 years, male 511.2
109_1 81 years, female 495.4
119_1 70 years, female 484.9
295_1 61 years, female 462.1
42_1 85 years, male 447.1
314_1 67 years, male 446.9
41_1 94 years, female 433.9
308_1 70 years, female 429.6
452_1 88 years, female 414.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

229.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 229.6
FF:10030-101E3 24-65 years, mixed 229.6

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