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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:62.7 nTPM
HPA Brain:57.9 nTPM
GTEx:62.7 nTPM
FANTOM5:84.0 Scaled Tags Per Million
Pig:59.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.9
Sample id Sample description nTPM
Amygdala
nTPM: 54.5
2814 Male, age 76, right hemisphere 66.7
2517 Female, age 94, left hemisphere 54.5
2695 Female, age 67, right hemisphere 52.9
1987 Female, age 91, left hemisphere 51.7
2514 Male, age 75, right hemisphere 46.5
Basal amygdala
nTPM: 55.6
2243 Female, age 91, right hemisphere 65.9
2110 Male, age 80, left hemisphere 56.3
2827 Female, age 67, right hemisphere 54.8
2685 Female, age 94, left hemisphere 53.4
1955 Male, age 76, both hemispheres 51.7
2609 Male, age 75, right hemisphere 51.7
Central amygdala
nTPM: 57.9
2826 Female, age 94, left hemisphere 63.3
2239 Male, age 80, left hemisphere 61.7
1905 Male, age 76, both hemispheres 60.2
2515 Male, age 75, right hemisphere 60.0
2701 Female, age 91, right hemisphere 44.2
Corticomedial amygdala
nTPM: 54.1
2829 Male, age 80, left hemisphere 68.4
2242 Female, age 91, right hemisphere 56.4
2240 Male, age 76, both hemispheres 51.1
2535 Female, age 67, right hemisphere 50.2
2429 Female, age 94, left hemisphere 49.5
2428 Male, age 75, right hemisphere 48.8
Lateral amygdala
nTPM: 56.7
2534 Female, age 94, left hemisphere 66.8
1883 Male, age 76, both hemispheres 63.8
2830 Female, age 67, right hemisphere 60.7
2256 Male, age 80, left hemisphere 52.0
2516 Male, age 75, right hemisphere 52.0
2255 Female, age 91, right hemisphere 45.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 62.7
Samples: 181

Max nTPM: 142.7
Min nTPM: 32.6
Std nTPM: 19.2
Median nTPM: 61.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 142.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 128.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 109.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 106.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 104.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 103.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 103.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 99.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 99.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 97.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 97.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 96.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 96.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 95.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 92.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 92.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 91.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 90.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 90.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 89.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 88.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 85.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 83.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 82.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 81.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 80.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 80.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 79.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 78.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 78.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 77.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 77.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 77.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 77.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 76.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 75.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 75.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 74.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 73.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 72.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 72.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 72.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 72.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 71.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 71.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 70.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 70.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 70.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 69.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 69.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 68.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 68.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 68.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 68.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 68.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 68.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 68.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 67.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 67.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 66.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 66.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 66.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 66.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 65.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 65.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 65.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 65.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 65.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 65.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 64.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 64.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 64.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 64.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 64.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 63.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 63.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 62.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 62.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 62.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 62.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 62.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 61.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 61.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 61.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 61.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 61.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 61.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 61.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 60.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 60.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 59.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 58.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 57.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 56.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 56.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 56.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 55.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 55.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 55.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 55.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 54.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 54.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 54.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 54.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 54.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 54.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 54.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 53.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 53.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 53.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 52.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 52.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 52.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 51.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 51.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 51.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 51.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 50.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 50.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 50.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 50.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 49.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 49.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 49.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 49.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 49.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 48.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 47.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 46.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 46.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 45.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 45.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 44.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 44.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 44.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 43.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 43.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 43.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 42.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 42.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 41.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 41.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 40.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 40.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 40.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 39.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 39.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 39.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 39.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 38.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 37.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 37.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 37.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 36.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 36.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 35.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 35.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 35.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 35.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 34.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 32.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 32.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 32.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 84.0
FF:10151-102I7 76 years, female 84.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.6
Pig sample Sample description nTPM
Amygdala
nTPM: 59.6
Samples: 4

Max nTPM: 74.9
Min nTPM: 49.2
Sample A Female 74.9
Sample B Female 53.2
Sample C Male 61.1
Sample D Male 49.2

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