We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.2
nTPM
HPA Brain:
16.5
nTPM
GTEx:
11.2
nTPM
FANTOM5:
16.8
Scaled Tags Per Million
Pig:
22.5
nTPM
Mouse:
42.1
nTPM
Allen mouse:
2.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 14.3
1870
Female, age 42, unknown
16.1
2019
Male, age 18, unknown
15.6
1827
Male, age 72, unknown
15.4
2828
Female, age 72, unknown
15.0
2411
Female, age 72, unknown
14.7
2666
Male, age 74, left hemisphere
14.2
2219
Male, age 76, both hemispheres
13.7
1833
Male, age 53, unknown
13.1
1830
Male, age 51, unknown
12.6
2586
Male, age 75, left hemisphere
12.2
Dorsal raphe nucleus nTPM: 15.5
2298
Female, age 72, unknown
18.2
2047
Male, age 72, unknown
15.2
1828
Male, age 53, unknown
14.9
2016
Female, age 72, unknown
14.8
2750
Male, age 76, both hemispheres
14.4
Inferior colliculus nTPM: 16.5
2097
Female, age 72, unknown
18.2
1890
Male, age 53, unknown
17.7
1848
Female, age 42, unknown
15.5
2849
Male, age 72, unknown
14.5
Median raphe nucleus nTPM: 13.9
2220
Male, age 76, midline
13.9
Periaquaductal grey, anterior nTPM: 13.8
2502
Female, age 75, unknown
15.0
1947
Male, age 18, unknown
14.4
1795
Male, age 51, unknown
12.0
Periaquaductal grey, dorsal nTPM: 14.3
1840
Male, age 53, unknown
16.1
2464
Female, age 72, unknown
14.7
1831
Male, age 72, unknown
13.8
2850
Male, age 76, both hemispheres
12.5
Periaquaductal grey, lateral nTPM: 13.2
2272
Male, age 74, both hemispheres
13.8
2053
Male, age 18, unknown
13.0
2140
Male, age 76, both hemispheres
12.8
Pretectal area nTPM: 15.4
2007
Male, age 72, unknown
19.2
2273
Male, age 74, both hemispheres
16.9
1816
Male, age 51, unknown
16.0
1817
Female, age 42, unknown
15.9
2667
Female, age 75, unknown
15.2
1944
Female, age 72, unknown
15.1
2825
Male, age 18, unknown
15.0
2224
Female, age 72, unknown
14.9
1815
Male, age 53, unknown
14.6
2316
Male, age 76, right hemisphere
13.7
2407
Male, age 75, both hemispheres
12.7
Red nucleus nTPM: 14.3
1821
Female, age 72, unknown
16.3
2725
Female, age 75, unknown
15.7
1954
Female, age 42, unknown
14.9
2588
Male, age 74, left hemisphere
14.7
1904
Male, age 53, unknown
14.6
2503
Female, age 72, unknown
14.1
1865
Male, age 51, unknown
13.9
2584
Male, age 75, left hemisphere
13.8
2785
Male, age 18, unknown
13.8
2769
Male, age 72, unknown
13.7
2227
Male, age 72, unknown
13.2
2823
Male, age 76, right hemisphere
12.7
Substantia nigra nTPM: 13.7
1889
Female, age 72, unknown
16.4
1941
Male, age 53, unknown
15.7
1916
Female, age 42, unknown
15.6
2241
Male, age 72, unknown
15.6
1851
Male, age 51, unknown
14.7
2590
Female, age 75, unknown
13.4
2665
Male, age 74, both hemispheres
12.7
2583
Male, age 75, right hemisphere
12.1
2409
Female, age 72, unknown
10.5
2699
Male, age 18, unknown
10.2
Superior colliculus nTPM: 14.7
1895
Male, age 76, right hemisphere
18.5
2261
Male, age 18, unknown
17.8
2087
Female, age 72, unknown
16.0
2664
Male, age 75, both hemispheres
16.0
1839
Male, age 51, unknown
15.4
2587
Male, age 74, left hemisphere
13.5
1796
Male, age 53, unknown
13.3
1995
Male, age 72, unknown
12.4
2668
Female, age 75, unknown
12.4
1913
Female, age 42, unknown
12.2
Ventral tegmental area nTPM: 13.5
1915
Female, age 42, unknown
15.9
1942
Male, age 51, unknown
14.8
2218
Male, age 76, both hemispheres
14.5
2410
Female, age 72, unknown
12.2
2223
Female, age 72, unknown
12.0
2021
Male, age 53, unknown
11.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 11.2
Samples: 139
Max nTPM: 32.4
Min nTPM: 5.2
Std nTPM: 3.9
Median nTPM: 10.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
32.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
19.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
19.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
19.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
19.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
19.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
18.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
18.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
17.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
17.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
16.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
16.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
15.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
15.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
15.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
15.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
15.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
15.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
14.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
14.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
14.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
14.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
14.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
14.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
14.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
14.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
14.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
14.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
13.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
13.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
13.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
13.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
12.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
12.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
12.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
12.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
12.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
12.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
12.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
12.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
12.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
12.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
12.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
11.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
11.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
11.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
11.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
11.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
11.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
11.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
11.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
11.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
11.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
11.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
11.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
11.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
10.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
10.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
10.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
10.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
10.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
10.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
10.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
10.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
10.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
10.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
10.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
10.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
10.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
10.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
10.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
10.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
9.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
9.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
9.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
9.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
9.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
8.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
8.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
8.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
8.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
8.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
8.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
8.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
8.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
8.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
7.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
7.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
7.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
7.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
7.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
7.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
7.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
7.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
7.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
7.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
7.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
7.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
7.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
7.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
7.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
7.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
6.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
6.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
6.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
6.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
6.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
6.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
6.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
6.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
5.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
5.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
5.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.2
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 42.1
Samples: 4
Max nTPM: 44.4
Min nTPM: 40.4
Sample A
Male
40.4
Sample B
Male
42.6
Sample C
Female
44.4
Sample D
Female
41.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.