BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.4 nTPM
HPA Brain:88.7 nTPM
GTEx:45.4 nTPM
FANTOM5:29.1 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:24.4 nTPM
Allen mouse:13.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 88.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.2
2289 Male, age 61, right hemisphere 73.9
1857 Female, age 85, left hemisphere 68.0
2290 Female, age 72, unknown 65.5
1781 Male, age 74, unknown 63.2
2288 Male, age 75, left hemisphere 60.1
1854 Male, age 80, left hemisphere 59.1
2846 Female, age 79, unknown 50.9
2481 Female, age 94, left hemisphere 32.5
Globus pallidus, externus
nTPM: 20.8
2646 Male, age 61, right hemisphere 30.1
2567 Female, age 72, unknown 22.3
2772 Female, age 79, unknown 19.4
2395 Male, age 75, both hemispheres 18.9
1996 Male, age 80, right hemisphere 13.4
Globus pallidus, internus
nTPM: 18.3
2483 Female, age 94, right hemisphere 25.3
2566 Female, age 72, unknown 23.4
2111 Female, age 85, right hemisphere 22.2
1818 Male, age 74, unknown 20.1
2037 Male, age 80, right hemisphere 14.7
2778 Female, age 91, both hemispheres 12.3
2287 Male, age 75, right hemisphere 10.0
Nucleus accumbens
nTPM: 62.0
2824 Male, age 61, right hemisphere 96.5
1783 Male, age 74, unknown 80.6
1856 Female, age 91, right hemisphere 78.2
1806 Female, age 85, left hemisphere 65.1
2286 Male, age 75, left hemisphere 63.0
2698 Female, age 72, unknown 48.7
2732 Male, age 80, right hemisphere 37.2
2391 Female, age 94, left hemisphere 26.9
Nucleus basalis of Meynert
nTPM: 50.4
2484 Female, age 94, left hemisphere 68.1
2393 Male, age 80, right hemisphere 55.5
2821 Male, age 75, both hemispheres 44.6
2569 Male, age 61, both hemispheres 33.5
Nucleus of the diagonal band
nTPM: 88.7
2029 Male, age 61, right hemisphere 120.7
2195 Female, age 85, both hemispheres 91.8
2775 Male, age 80, right hemisphere 87.0
1812 Female, age 91, both hemispheres 76.3
1979 Male, age 74, unknown 67.6
Putamen
nTPM: 56.7
1838 Male, age 80, right hemisphere 69.9
1937 Female, age 91, right hemisphere 67.0
2647 Male, age 75, left hemisphere 59.5
2466 Female, age 79, unknown 57.2
1829 Male, age 74, unknown 55.9
2489 Female, age 72, unknown 49.3
2482 Female, age 94, left hemisphere 37.8
Septal nuclei
nTPM: 79.7
1960 Male, age 74, unknown 103.7
2059 Female, age 85, both hemispheres 87.8
2629 Female, age 94, right hemisphere 82.4
2009 Female, age 91, both hemispheres 81.6
2031 Female, age 72, unknown 76.8
2394 Male, age 61, left hemisphere 63.3
2199 Male, age 80, right hemisphere 62.1
Stria terminalis, bed nucleus
nTPM: 83.0
2486 Female, age 94, both hemispheres 104.1
1974 Female, age 91, both hemispheres 79.9
2201 Male, age 74, unknown 65.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 45.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.3
Samples: 300

Max nTPM: 69.3
Min nTPM: 4.2
Std nTPM: 12.7
Median nTPM: 34.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 69.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 67.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 65.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 59.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 58.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 56.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 56.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 54.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 53.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 53.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 52.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.4
Samples: 285

Max nTPM: 103.2
Min nTPM: 2.0
Std nTPM: 16.2
Median nTPM: 45.0
GTEX-1KD4Q-0011-R6a-SM-F2TAK 40-49 years, male 103.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 99.3
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 88.8
GTEX-14DAQ-0011-R6a-SM-G9ERO 60-69 years, female 86.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 83.0
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 79.9
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 79.0
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 77.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 77.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 77.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 74.3
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Brain - Putamen (basal ganglia)
Average nTPM: 29.2
Samples: 254

Max nTPM: 75.2
Min nTPM: 4.1
Std nTPM: 12.8
Median nTPM: 28.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 75.2
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 67.3
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 54.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 52.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 52.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 52.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 52.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 51.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 51.0
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 50.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 49.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.1
FF:10164-103B2 76 years, female 21.1
Nucleus accumbens
Scaled Tags Per Million: 25.4
FF:10037-101F1 23-56 years, mixed 25.4
Putamen
Scaled Tags Per Million: 29.1
FF:10176-103C5 60 years, female 29.1
Globus pallidus
Scaled Tags Per Million: 6.3
FF:10175-103C4 60 years, female 10.9
FF:10161-103A8 76 years, female 1.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 12.3
Pig sample Sample description nTPM
Caudate
nTPM: 8.3
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.6
Sample A Female 8.1
Sample B Female 9.1
Sample C Male 7.6
Sample D Male 8.3
Putamen
nTPM: 6.7
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.3
Sample A Female 6.6
Sample B Female 6.3
Sample C Male 6.5
Sample D Male 7.3
Septum
nTPM: 12.4
Samples: 4

Max nTPM: 13.0
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 13.0
Sample C Male 12.0
Sample D Male 13.0
Ventral pallidum
nTPM: 10.5
Samples: 4

Max nTPM: 15.7
Min nTPM: 7.9
Sample A Female 8.7
Sample B Female 9.7
Sample C Male 15.7
Sample D Male 7.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 24.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.7
Samples: 4

Max nTPM: 16.4
Min nTPM: 11.2
Sample A Male 11.2
Sample B Male 11.6
Sample C Female 16.4
Sample D Female 15.7
Septum
nTPM: 17.0
Samples: 4

Max nTPM: 21.2
Min nTPM: 14.4
Sample A Male 21.2
Sample B Male 16.3
Sample C Female 16.0
Sample D Female 14.4
Ventral forebrain
nTPM: 24.3
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.5
Sample A Male 26.6
Sample B Male 21.5
Sample C Female 23.1
Sample D Female 26.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 13.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.1
70305419 Antisense, RP_050609_04_B06, Mouse strain C57BL/6J (56 days, male) 13.1
Pallidum
Expression energy: 10.5
70305419 Antisense, RP_050609_04_B06, Mouse strain C57BL/6J (56 days, male) 10.5

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