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  • SUMMARY

  • TISSUE

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  • SUBCELL

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:149.0 nTPM
FANTOM5:5.5 Scaled Tags Per Million
Pig:99.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB019436
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 149.0
Samples: 300

Max nTPM: 304.0
Min nTPM: 74.5
Std nTPM: 28.5
Median nTPM: 144.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 304.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 259.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 252.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 248.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 245.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 242.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 231.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 231.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 223.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 219.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 218.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 212.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 200.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 197.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 195.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 195.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 194.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 191.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 190.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 188.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 188.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 186.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 182.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 182.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 181.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 179.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 179.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 179.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 178.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 177.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 177.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 176.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 176.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 175.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 175.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 175.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 175.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 174.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 174.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 172.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 172.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 172.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 172.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 171.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 171.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 171.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 170.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 170.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 170.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 170.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 169.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 169.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 169.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 168.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 168.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 168.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 168.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 167.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 167.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 166.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 166.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 165.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 164.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 164.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 164.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 163.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 163.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 162.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 162.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 161.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 161.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 161.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 161.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 161.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 161.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 161.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 160.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 160.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 160.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 159.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 159.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 158.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 158.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 158.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 158.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 158.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 158.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 158.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 158.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 157.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 156.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 156.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 156.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 156.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 155.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 155.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 155.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 155.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 155.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 155.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 155.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 154.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 154.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 154.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 154.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 154.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 154.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 154.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 154.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 154.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 153.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 153.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 153.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 153.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 153.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 153.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 152.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 152.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 152.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 152.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 150.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 150.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 150.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 150.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 150.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 150.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 150.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 150.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 149.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 149.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 149.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 149.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 149.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 149.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 148.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 148.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 148.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 148.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 148.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 147.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 147.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 147.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 147.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 147.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 146.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 145.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 145.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 145.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 144.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 144.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 144.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 144.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 144.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 144.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 144.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 143.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 143.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 143.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 143.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 142.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 142.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 142.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 142.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 142.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 142.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 142.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 142.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 142.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 142.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 142.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 141.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 141.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 141.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 141.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 141.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 141.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 141.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 140.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 140.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 140.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 140.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 140.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 140.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 139.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 139.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 139.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 139.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 139.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 139.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 139.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 139.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 139.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 139.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 139.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 138.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 138.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 138.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 138.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 138.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 138.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 138.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 137.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 137.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 137.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 137.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 137.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 136.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 136.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 136.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 136.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 136.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 136.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 135.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 135.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 135.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 135.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 135.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 134.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 134.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 134.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 134.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 134.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 134.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 134.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 134.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 133.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 133.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 133.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 133.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 131.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 131.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 130.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 130.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 130.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 129.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 129.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 129.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 129.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 128.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 128.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 128.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 127.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 127.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 127.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 126.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 126.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 126.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 125.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 125.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 125.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 124.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 124.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 124.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 124.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 124.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 123.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 122.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 121.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 121.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 121.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 121.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 120.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 120.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 119.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 118.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 118.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 117.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 117.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 117.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 117.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 116.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 116.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 115.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 113.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 113.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 113.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 113.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 111.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 111.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 111.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 109.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 108.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 108.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 106.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 105.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 105.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 103.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 101.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 101.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 100.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 98.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 97.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 94.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 90.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 89.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 74.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.5
FF:10164-103B2 76 years, female 5.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.5
Pig sample Sample description nTPM
Caudate
nTPM: 99.5
Samples: 4

Max nTPM: 112.9
Min nTPM: 93.5
Sample A Female 93.5
Sample B Female 94.4
Sample C Male 112.9
Sample D Male 97.2

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