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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:356.8 nTPM
HPA:356.8 nTPM
GTEx:200.2 nTPM
FANTOM5:612.7 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007912
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Not detected
Goblet cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

356.8
overview
Male, age 65
Small intestine sample 232
nTPM: 294.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 413.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 394.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 325.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 200.2
Samples: 207

Max nTPM: 1452.5
Min nTPM: 0.0
Std nTPM: 232.9
Median nTPM: 128.1
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1452.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1152.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 984.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 955.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 953.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 769.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 768.3
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 751.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 714.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 689.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 683.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 675.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 675.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 651.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 591.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 590.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 555.3
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 546.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 544.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 521.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 507.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 483.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 448.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 444.7
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 436.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 431.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 419.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 415.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 389.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 388.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 385.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 385.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 380.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 375.9
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 371.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 370.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 355.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 352.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 351.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 345.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 338.0
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 337.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 335.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 328.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 314.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 305.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 304.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 302.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 292.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 289.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 278.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 276.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 270.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 268.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 264.8
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 264.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 263.2
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 262.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 262.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 259.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 251.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 248.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 246.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 238.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 228.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 227.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 224.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 224.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 215.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 214.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 213.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 212.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 211.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 208.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 205.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 205.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 204.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 204.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 203.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 194.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 191.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 189.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 189.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 186.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 180.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 177.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 169.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 168.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 164.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 162.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 156.8
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 154.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 150.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 150.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 149.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 148.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 146.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 146.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 143.1
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 141.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 140.4
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 131.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 130.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 128.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 127.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 126.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 125.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 124.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 123.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 116.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 108.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 108.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 108.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 108.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 106.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 101.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 98.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 92.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 91.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 90.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 89.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 87.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 87.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 87.0
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 86.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 83.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 82.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 80.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 75.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 74.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 74.3
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 72.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 70.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 65.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 65.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 63.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 57.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 57.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 55.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 54.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 52.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 52.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 51.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 50.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 48.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 45.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 40.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 39.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 36.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 35.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 35.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 35.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 35.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 30.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 29.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 26.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 24.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 24.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 23.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 21.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 19.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 18.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 13.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 12.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 12.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 10.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 10.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 9.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 8.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 7.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 7.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 7.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 7.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 6.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5.4
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 4.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 4.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.7
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1.3
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.0
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 0.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 0.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

612.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 612.7
FF:10024-101D6 15,40,85 years, mixed 612.7

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