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  • OAZ1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:321.5 nTPM
HPA Brain:99.6 nTPM
GTEx:321.5 nTPM
FANTOM5:451.7 Scaled Tags Per Million
Pig:255.4 nTPM
Mouse:606.7 nTPM
Allen mouse:19.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.6
Sample id Sample description nTPM
Amygdala
nTPM: 94.5
2814 Male, age 76, right hemisphere 112.3
1987 Female, age 91, left hemisphere 110.7
2514 Male, age 75, right hemisphere 90.1
2517 Female, age 94, left hemisphere 87.1
2695 Female, age 67, right hemisphere 72.5
Basal amygdala
nTPM: 91.4
1955 Male, age 76, both hemispheres 106.7
2110 Male, age 80, left hemisphere 103.6
2685 Female, age 94, left hemisphere 99.2
2609 Male, age 75, right hemisphere 84.7
2243 Female, age 91, right hemisphere 80.9
2827 Female, age 67, right hemisphere 73.2
Central amygdala
nTPM: 99.6
2826 Female, age 94, left hemisphere 120.7
1905 Male, age 76, both hemispheres 108.2
2239 Male, age 80, left hemisphere 95.0
2515 Male, age 75, right hemisphere 90.4
2701 Female, age 91, right hemisphere 83.4
Corticomedial amygdala
nTPM: 94.5
2829 Male, age 80, left hemisphere 118.9
2428 Male, age 75, right hemisphere 111.5
2429 Female, age 94, left hemisphere 100.6
2242 Female, age 91, right hemisphere 98.6
2535 Female, age 67, right hemisphere 76.8
2240 Male, age 76, both hemispheres 60.8
Lateral amygdala
nTPM: 92.0
1883 Male, age 76, both hemispheres 118.8
2534 Female, age 94, left hemisphere 109.3
2255 Female, age 91, right hemisphere 88.8
2256 Male, age 80, left hemisphere 86.9
2516 Male, age 75, right hemisphere 76.5
2830 Female, age 67, right hemisphere 71.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 321.5
Samples: 181

Max nTPM: 1027.9
Min nTPM: 156.0
Std nTPM: 117.7
Median nTPM: 303.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1027.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 988.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 683.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 609.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 579.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 560.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 556.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 543.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 533.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 527.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 503.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 487.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 476.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 454.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 445.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 441.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 440.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 435.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 431.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 429.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 427.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 426.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 423.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 419.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 409.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 408.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 407.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 405.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 403.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 403.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 399.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 398.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 394.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 394.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 390.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 388.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 388.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 387.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 386.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 382.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 377.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 375.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 370.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 370.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 368.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 368.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 364.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 362.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 361.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 358.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 357.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 357.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 354.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 353.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 350.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 350.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 348.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 347.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 345.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 344.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 342.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 341.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 339.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 339.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 339.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 335.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 332.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 332.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 331.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 330.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 330.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 327.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 326.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 324.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 323.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 321.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 320.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 320.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 319.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 316.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 313.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 313.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 313.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 312.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 311.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 309.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 306.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 305.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 304.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 303.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 303.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 302.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 300.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 299.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 297.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 296.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 292.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 292.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 292.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 291.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 291.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 289.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 287.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 285.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 285.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 283.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 281.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 280.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 278.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 277.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 275.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 273.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 273.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 272.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 272.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 269.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 268.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 265.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 264.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 264.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 263.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 262.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 260.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 260.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 257.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 257.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 257.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 256.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 254.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 253.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 251.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 250.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 249.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 249.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 247.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 244.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 244.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 243.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 241.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 241.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 240.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 238.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 238.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 238.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 238.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 233.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 233.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 231.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 229.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 229.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 226.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 225.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 225.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 224.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 223.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 221.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 216.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 214.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 213.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 211.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 210.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 209.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 201.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 200.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 200.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 200.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 197.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 197.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 196.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 195.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 195.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 195.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 194.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 193.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 186.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 185.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 185.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 174.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 168.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 162.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 156.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

451.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 451.7
FF:10151-102I7 76 years, female 451.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.4
Pig sample Sample description nTPM
Amygdala
nTPM: 255.4
Samples: 4

Max nTPM: 330.8
Min nTPM: 202.2
Sample A Female 330.8
Sample B Female 257.7
Sample C Male 230.7
Sample D Male 202.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

606.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 606.7
Samples: 4

Max nTPM: 658.2
Min nTPM: 577.2
Sample A Male 577.2
Sample B Male 609.8
Sample C Female 658.2
Sample D Female 581.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.3
69782533 Antisense, RP_050505_03_B12, Mouse strain C57BL/6J (56 days, male) 19.3

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