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  • EEF1D
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:405.3 nTPM
HPA:106.4 nTPM
GTEx:405.3 nTPM
FANTOM5:159.1 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045101
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Not detected
Goblet cells High
Paneth cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.4
overview
Male, age 65
Small intestine sample 232
nTPM: 124.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 131.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 113.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 56.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

405.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 405.3
Samples: 207

Max nTPM: 767.9
Min nTPM: 225.9
Std nTPM: 109.0
Median nTPM: 392.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 767.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 728.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 702.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 689.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 673.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 647.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 641.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 634.2
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 633.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 630.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 608.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 588.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 588.1
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 587.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 586.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 582.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 581.7
GTEX-1192X-2526-SM-59868 50-59 years, male 579.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 578.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 564.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 563.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 556.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 556.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 538.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 532.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 521.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 521.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 521.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 520.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 518.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 517.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 517.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 514.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 514.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 512.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 512.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 511.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 506.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 500.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 499.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 499.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 499.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 498.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 496.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 493.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 484.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 482.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 481.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 481.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 480.9
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 479.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 477.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 475.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 474.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 469.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 468.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 465.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 461.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 457.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 452.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 451.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 451.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 450.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 450.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 447.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 446.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 445.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 445.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 443.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 439.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 438.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 437.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 436.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 436.9
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 435.5
GTEX-178AV-1226-SM-GOR11 40-49 years, male 428.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 428.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 426.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 426.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 422.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 422.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 417.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 416.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 415.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 413.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 411.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 410.0
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 408.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 408.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 408.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 407.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 405.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 405.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 405.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 404.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 403.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 403.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 402.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 402.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 399.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 398.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 398.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 394.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 392.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 391.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 391.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 389.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 388.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 386.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 385.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 384.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 382.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 381.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 377.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 376.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 375.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 369.2
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 369.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 364.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 364.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 363.2
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 362.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 361.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 361.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 360.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 359.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 358.8
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 357.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 356.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 354.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 350.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 349.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 349.8
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 348.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 344.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 342.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 342.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 340.1
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 336.7
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 336.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 333.7
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 332.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 332.6
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 331.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 329.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 328.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 326.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 326.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 324.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 324.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 324.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 321.8
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 321.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 318.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 317.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 316.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 315.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 315.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 314.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 312.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 311.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 307.2
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 307.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 306.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 306.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 305.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 304.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 303.2
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 302.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 302.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 300.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 300.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 300.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 299.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 297.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 296.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 289.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 289.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 289.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 287.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 286.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 282.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 279.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 278.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 275.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 275.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 275.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 273.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 271.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 271.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 271.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 270.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 268.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 265.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 265.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 264.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 263.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 261.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 260.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 255.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 253.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 249.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 249.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 245.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 242.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 238.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 225.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 159.1
FF:10024-101D6 15,40,85 years, mixed 159.1

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