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  • NDRG1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:185.4 nTPM
HPA Brain:497.7 nTPM
GTEx:185.4 nTPM
FANTOM5:257.7 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:44.2 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

497.7
Sample id Sample description nTPM
Amygdala
nTPM: 433.7
2695 Female, age 67, right hemisphere 641.8
2814 Male, age 76, right hemisphere 616.9
2517 Female, age 94, left hemisphere 353.9
2514 Male, age 75, right hemisphere 304.2
1987 Female, age 91, left hemisphere 251.9
Basal amygdala
nTPM: 373.3
2827 Female, age 67, right hemisphere 636.3
2685 Female, age 94, left hemisphere 362.8
2609 Male, age 75, right hemisphere 345.8
2110 Male, age 80, left hemisphere 337.7
1955 Male, age 76, both hemispheres 331.0
2243 Female, age 91, right hemisphere 226.1
Central amygdala
nTPM: 422.2
2826 Female, age 94, left hemisphere 691.4
1905 Male, age 76, both hemispheres 423.8
2239 Male, age 80, left hemisphere 339.4
2701 Female, age 91, right hemisphere 333.1
2515 Male, age 75, right hemisphere 323.5
Corticomedial amygdala
nTPM: 257.5
2535 Female, age 67, right hemisphere 387.9
2428 Male, age 75, right hemisphere 301.9
2429 Female, age 94, left hemisphere 274.3
2240 Male, age 76, both hemispheres 234.8
2829 Male, age 80, left hemisphere 207.9
2242 Female, age 91, right hemisphere 138.0
Lateral amygdala
nTPM: 497.7
2830 Female, age 67, right hemisphere 824.8
2534 Female, age 94, left hemisphere 501.6
2516 Male, age 75, right hemisphere 488.9
1883 Male, age 76, both hemispheres 404.9
2256 Male, age 80, left hemisphere 400.8
2255 Female, age 91, right hemisphere 365.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 185.4
Samples: 181

Max nTPM: 694.0
Min nTPM: 23.3
Std nTPM: 88.0
Median nTPM: 167.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 694.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 491.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 478.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 467.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 359.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 352.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 351.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 334.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 334.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 320.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 313.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 311.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 309.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 308.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 303.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 301.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 292.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 289.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 287.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 286.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 284.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 283.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 281.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 280.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 279.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 278.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 277.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 274.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 271.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 270.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 265.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 261.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 255.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 255.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 254.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 253.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 248.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 246.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 242.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 241.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 241.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 239.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 237.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 237.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 232.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 232.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 231.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 225.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 224.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 222.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 221.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 214.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 213.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 212.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 205.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 204.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 204.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 200.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 200.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 199.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 198.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 195.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 195.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 195.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 194.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 191.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 191.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 191.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 188.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 186.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 185.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 185.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 185.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 183.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 182.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 181.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 178.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 177.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 174.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 174.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 173.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 171.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 170.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 170.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 170.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 169.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 169.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 169.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 167.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 167.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 167.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 164.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 164.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 163.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 162.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 160.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 160.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 160.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 159.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 158.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 158.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 158.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 158.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 157.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 156.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 153.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 153.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 153.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 152.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 152.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 149.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 148.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 147.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 147.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 145.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 145.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 144.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 143.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 142.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 140.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 139.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 139.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 136.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 136.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 128.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 128.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 128.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 128.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 125.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 125.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 124.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 124.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 123.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 119.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 119.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 117.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 117.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 115.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 114.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 112.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 108.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 107.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 106.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 101.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 100.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 99.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 99.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 97.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 96.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 96.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 96.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 95.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 92.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 92.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 91.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 88.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 86.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 82.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 81.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 78.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 77.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 77.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 69.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 68.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 62.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 23.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

257.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 257.7
FF:10151-102I7 76 years, female 257.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.1
Pig sample Sample description nTPM
Amygdala
nTPM: 64.1
Samples: 4

Max nTPM: 81.6
Min nTPM: 49.9
Sample A Female 67.9
Sample B Female 81.6
Sample C Male 56.9
Sample D Male 49.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 44.2
Samples: 4

Max nTPM: 55.3
Min nTPM: 39.2
Sample A Male 41.8
Sample B Male 40.4
Sample C Female 55.3
Sample D Female 39.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
70429303 Antisense, RP_050614_01_D08, Mouse strain C57BL/6J (56 days, male) 4.3

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