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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:352.2 nTPM
GTEx:352.2 nTPM
FANTOM5:248.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 352.2
Samples: 105

Max nTPM: 568.5
Min nTPM: 169.8
Std nTPM: 75.4
Median nTPM:
490_1 67 years, female 568.5
6_1 73 years, female 559.0
415_1 77 years, female 507.5
43_1 64 years, female 490.8
35_1 74 years, female 487.4
491_1 89 years, female 481.0
126_1 63 years, male 480.2
495_1 57 years, female 479.4
307_1 66 years, female 464.0
117_1 61 years, male 460.0
162_1 79 years, female 445.8
526_1 61 years, male 445.1
153_1 70 years, female 436.7
81_1 67 years, male 432.3
518_1 75 years, female 430.4
9_1 66 years, female 425.1
466_1 57 years, female 423.2
386_1 76 years, male 421.6
315_1 62 years, female 416.7
246_1 77 years, male 415.0
217_1 76 years, male 413.0
468_1 89 years, male 406.3
324_1 76 years, male 403.2
149_1 88 years, male 401.6
499_1 55 years, female 398.3
115_1 83 years, male 395.7
322_1 76 years, male 395.3
142_1 61 years, female 394.8
32_1 67 years, male 393.9
352_1 62 years, male 392.8
316_1 62 years, male 391.5
18_1 88 years, male 389.7
311_1 78 years, male 388.6
389_1 86 years, female 386.7
145_1 84 years, male 384.1
319_1 81 years, male 384.1
2_1 77 years, female 382.5
137_1 83 years, male 381.7
266_1 85 years, male 380.7
243_1 75 years, male 380.4
414_1 84 years, female 378.8
447_1 81 years, male 374.2
375_1 74 years, female 368.8
347_1 72 years, male 360.1
425_1 59 years, female 357.8
265_1 87 years, male 357.5
350_1 84 years, female 355.5
120_1 70 years, female 353.9
335_1 73 years, female 353.7
17_1 71 years, male 351.4
321_1 62 years, female 350.0
377_1 82 years, female 349.2
237_1 82 years, male 347.3
354_1 81 years, female 347.2
293_1 68 years, female 343.8
480_1 63 years, male 343.1
251_1 78 years, male 341.6
405_1 91 years, male 341.5
139_1 64 years, female 341.1
172_1 72 years, female 338.9
189_1 76 years, male 337.8
355_1 70 years, female 333.6
229_1 69 years, female 331.8
348_1 84 years, male 331.0
313_1 79 years, female 330.2
320_1 89 years, female 327.4
42_1 85 years, male 321.9
119_1 70 years, female 320.0
99_1 64 years, male 319.3
318_1 68 years, male 318.7
376_1 75 years, female 316.3
379_1 60 years, male 315.5
292_1 71 years, male 313.3
89_1 63 years, male 312.4
413_1 59 years, female 312.3
109_1 81 years, female 311.8
254_1 77 years, female 309.6
503_1 68 years, male 303.3
286_1 68 years, female 301.4
4_1 88 years, female 297.2
384_1 83 years, male 297.0
517_1 88 years, male 296.6
406_1 79 years, male 296.5
218_1 71 years, female 293.9
353_1 82 years, female 290.3
356_1 87 years, female 285.7
291_1 76 years, male 282.4
394_1 75 years, female 281.3
404_1 82 years, female 271.8
308_1 70 years, female 268.4
173_1 67 years, male 266.9
501_1 88 years, male 266.4
396_1 62 years, male 264.4
288_1 66 years, female 262.5
177_1 74 years, male 261.9
41_1 94 years, female 260.2
349_1 83 years, male 255.7
317_1 60 years, male 253.8
351_1 91 years, male 238.3
314_1 67 years, male 230.9
264_1 73 years, female 220.2
163_1 78 years, male 219.3
506_1 65 years, male 213.5
295_1 61 years, female 193.2
452_1 88 years, female 169.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

248.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 248.9
FF:10030-101E3 24-65 years, mixed 248.9

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