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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
168.6
nTPM
Monaco:
220.2
nTPM
Schmiedel:
70.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
168.6
HPA sample
nTPM
gdT-cell nTPM: 166.8
Samples: 6
Max nTPM: 198.8
Min nTPM: 121.2
P10809_1007
121.2
P10809_1022
185.1
P10809_1041
198.8
P10809_1060
168.5
P10809_1077
153.5
P10809_1098
173.6
MAIT T-cell nTPM: 142.5
Samples: 6
Max nTPM: 163.7
Min nTPM: 100.4
P10809_1006
100.4
P10809_1024
163.7
P10809_1043
161.2
P10809_1062
151.5
P10809_1083
134.8
P10809_1097
143.1
Memory CD4 T-cell nTPM: 154.2
Samples: 6
Max nTPM: 193.4
Min nTPM: 113.1
P10809_1014
113.1
P10809_1026
193.4
P10809_1045
189.5
P10809_1064
142.3
P10809_1086
135.6
P10809_1113
151.5
Memory CD8 T-cell nTPM: 168.6
Samples: 5
Max nTPM: 187.6
Min nTPM: 139.1
P10809_1012
139.1
P10809_1027
187.6
P10809_1046
184.4
P10809_1065
159.9
P10809_1111
171.9
Naive CD4 T-cell nTPM: 145.9
Samples: 6
Max nTPM: 193.9
Min nTPM: 99.8
P10809_1015
99.8
P10809_1030
157.3
P10809_1049
193.9
P10809_1068
155.2
P10809_1085
114.2
P10809_1112
155.2
Naive CD8 T-cell nTPM: 152.1
Samples: 6
Max nTPM: 173.8
Min nTPM: 115.5
P10809_1016
115.5
P10809_1031
173.8
P10809_1050
163.3
P10809_1069
163.4
P10809_1087
140.7
P10809_1110
155.8
T-reg nTPM: 155.8
Samples: 6
Max nTPM: 194.1
Min nTPM: 90.2
P10809_1018
90.2
P10809_1037
148.4
P10809_1056
194.1
P10809_1075
179.3
P10809_1094
172.8
P10809_1106
150.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
220.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 160.4
Samples: 4
Max nTPM: 200.2
Min nTPM: 122.4
RHH5202_R3573
188.2
RHH5230_R3602
122.4
RHH5259_R3631
130.8
RHH5288_R3660
200.2
Effector memory CD8 T-cell nTPM: 207.5
Samples: 4
Max nTPM: 252.8
Min nTPM: 165.4
RHH5203_R3574
223.9
RHH5231_R3603
187.8
RHH5260_R3632
165.4
RHH5289_R3661
252.8
MAIT T-cell nTPM: 177.0
Samples: 4
Max nTPM: 203.8
Min nTPM: 128.4
RHH5233_R3605
183.7
RHH5205_R3576
128.4
RHH5262_R3634
192.1
RHH5297_R3663
203.8
Memory CD4 T-cell TFH nTPM: 208.6
Samples: 4
Max nTPM: 235.7
Min nTPM: 182.4
RHH5300_R3666
196.7
RHH5236_R3608
235.7
RHH5265_R3637
182.4
RHH5208_R3579
219.5
Memory CD4 T-cell Th1 nTPM: 163.7
Samples: 4
Max nTPM: 224.2
Min nTPM: 107.6
RHH5210_R3581
173.3
RHH5302_R3668
224.2
RHH5238_R3610
107.6
RHH5267_R3639
149.6
Memory CD4 T-cell Th1/Th17 nTPM: 167.6
Samples: 4
Max nTPM: 241.7
Min nTPM: 79.1
RHH5303_R3669
241.7
RHH5211_R3582
195.0
RHH5239_R3611
79.1
RHH5268_R3640
154.4
Memory CD4 T-cell Th17 nTPM: 165.8
Samples: 4
Max nTPM: 210.2
Min nTPM: 138.1
RHH5304_R3670
171.1
RHH5212_R3583
210.2
RHH5240_R3612
138.1
RHH5269_R3641
143.8
Memory CD4 T-cell Th2 nTPM: 177.9
Samples: 4
Max nTPM: 185.3
Min nTPM: 163.7
RHH5305_R3671
185.3
RHH5213_R3584
163.7
RHH5241_R3613
177.8
RHH5270_R3642
184.9
Naive CD4 T-cell nTPM: 156.6
Samples: 4
Max nTPM: 185.8
Min nTPM: 134.3
RHH5306_R3672
163.5
RHH5214_R3585
185.8
RHH5242_R3614
142.8
RHH5271_R3643
134.3
Naive CD8 T-cell nTPM: 147.8
Samples: 4
Max nTPM: 198.6
Min nTPM: 86.5
RHH5201_R3572
154.6
RHH5229_R3601
86.5
RHH5258_R3630
198.6
RHH5287_R3659
151.5
Non-Vd2 gdTCR nTPM: 220.3
Samples: 4
Max nTPM: 291.9
Min nTPM: 145.7
RHH5235_R3607
145.7
RHH5264_R3636
291.9
RHH5207_R3578
184.3
RHH5299_R3665
259.1
T-reg nTPM: 151.0
Samples: 4
Max nTPM: 190.0
Min nTPM: 120.5
RHH5301_R3667
152.7
RHH5237_R3609
190.0
RHH5266_R3638
120.5
RHH5209_R3580
140.7
Terminal effector memory CD4 T-cell nTPM: 161.6
Samples: 2
Max nTPM: 206.4
Min nTPM: 116.8
RHH5243_R3615
116.8
RHH5272_R3644
206.4
Terminal effector memory CD8 T-cell nTPM: 197.6
Samples: 4
Max nTPM: 230.8
Min nTPM: 158.3
RHH5232_R3604
170.5
RHH5204_R3575
230.6
RHH5261_R3633
158.3
RHH5296_R3662
230.8
Vd2 gdTCR nTPM: 191.6
Samples: 4
Max nTPM: 229.2
Min nTPM: 156.7
RHH5234_R3606
181.8
RHH5206_R3577
229.2
RHH5263_R3635
156.7
RHH5298_R3664
198.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
