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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.9
nTPM
Monaco:
87.6
nTPM
Schmiedel:
98.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
HPA sample
nTPM
gdT-cell nTPM: 10.6
Samples: 6
Max nTPM: 14.5
Min nTPM: 6.3
P10809_1007
8.8
P10809_1022
12.2
P10809_1041
6.3
P10809_1060
14.5
P10809_1077
9.9
P10809_1098
11.8
MAIT T-cell nTPM: 11.7
Samples: 6
Max nTPM: 13.5
Min nTPM: 8.8
P10809_1006
13.3
P10809_1024
13.5
P10809_1043
8.9
P10809_1062
13.5
P10809_1083
8.8
P10809_1097
11.9
Memory CD4 T-cell nTPM: 12.9
Samples: 6
Max nTPM: 15.1
Min nTPM: 11.2
P10809_1014
12.6
P10809_1026
14.2
P10809_1045
11.4
P10809_1064
11.2
P10809_1086
13.1
P10809_1113
15.1
Memory CD8 T-cell nTPM: 11.2
Samples: 5
Max nTPM: 15.1
Min nTPM: 8.9
P10809_1012
12.3
P10809_1027
8.9
P10809_1046
10.7
P10809_1065
9.1
P10809_1111
15.1
Naive CD4 T-cell nTPM: 12.3
Samples: 6
Max nTPM: 16.3
Min nTPM: 8.7
P10809_1015
11.2
P10809_1030
12.3
P10809_1049
8.7
P10809_1068
9.0
P10809_1085
16.3
P10809_1112
16.0
Naive CD8 T-cell nTPM: 11.4
Samples: 6
Max nTPM: 15.8
Min nTPM: 8.2
P10809_1016
8.3
P10809_1031
15.8
P10809_1050
11.3
P10809_1069
8.2
P10809_1087
13.0
P10809_1110
12.0
T-reg nTPM: 10.7
Samples: 6
Max nTPM: 15.4
Min nTPM: 4.2
P10809_1018
11.0
P10809_1037
4.2
P10809_1056
13.4
P10809_1075
6.3
P10809_1094
15.4
P10809_1106
13.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 61.0
Samples: 4
Max nTPM: 70.5
Min nTPM: 54.7
RHH5202_R3573
70.5
RHH5230_R3602
61.1
RHH5259_R3631
54.7
RHH5288_R3660
57.6
Effector memory CD8 T-cell nTPM: 61.1
Samples: 4
Max nTPM: 72.2
Min nTPM: 54.5
RHH5203_R3574
57.8
RHH5231_R3603
72.2
RHH5260_R3632
60.0
RHH5289_R3661
54.5
MAIT T-cell nTPM: 53.5
Samples: 4
Max nTPM: 58.7
Min nTPM: 48.9
RHH5233_R3605
52.9
RHH5205_R3576
58.7
RHH5262_R3634
48.9
RHH5297_R3663
53.3
Memory CD4 T-cell TFH nTPM: 70.9
Samples: 4
Max nTPM: 76.7
Min nTPM: 62.5
RHH5300_R3666
62.5
RHH5236_R3608
70.0
RHH5265_R3637
74.3
RHH5208_R3579
76.7
Memory CD4 T-cell Th1 nTPM: 77.3
Samples: 4
Max nTPM: 89.3
Min nTPM: 63.6
RHH5210_R3581
89.3
RHH5302_R3668
63.6
RHH5238_R3610
83.6
RHH5267_R3639
72.8
Memory CD4 T-cell Th1/Th17 nTPM: 73.1
Samples: 4
Max nTPM: 89.0
Min nTPM: 58.7
RHH5303_R3669
69.3
RHH5211_R3582
75.5
RHH5239_R3611
89.0
RHH5268_R3640
58.7
Memory CD4 T-cell Th17 nTPM: 76.1
Samples: 4
Max nTPM: 104.4
Min nTPM: 61.8
RHH5304_R3670
68.3
RHH5212_R3583
69.9
RHH5240_R3612
104.4
RHH5269_R3641
61.8
Memory CD4 T-cell Th2 nTPM: 67.7
Samples: 4
Max nTPM: 76.4
Min nTPM: 63.0
RHH5305_R3671
66.6
RHH5213_R3584
76.4
RHH5241_R3613
64.7
RHH5270_R3642
63.0
Naive CD4 T-cell nTPM: 87.3
Samples: 4
Max nTPM: 94.8
Min nTPM: 76.2
RHH5306_R3672
76.2
RHH5214_R3585
89.9
RHH5242_R3614
88.2
RHH5271_R3643
94.8
Naive CD8 T-cell nTPM: 87.6
Samples: 4
Max nTPM: 106.5
Min nTPM: 69.7
RHH5201_R3572
101.6
RHH5229_R3601
106.5
RHH5258_R3630
69.7
RHH5287_R3659
72.5
Non-Vd2 gdTCR nTPM: 57.5
Samples: 4
Max nTPM: 65.3
Min nTPM: 45.9
RHH5235_R3607
55.4
RHH5264_R3636
63.2
RHH5207_R3578
65.3
RHH5299_R3665
45.9
T-reg nTPM: 68.7
Samples: 4
Max nTPM: 88.4
Min nTPM: 58.3
RHH5301_R3667
58.3
RHH5237_R3609
59.4
RHH5266_R3638
68.8
RHH5209_R3580
88.4
Terminal effector memory CD4 T-cell nTPM: 54.9
Samples: 2
Max nTPM: 55.7
Min nTPM: 54.1
RHH5243_R3615
55.7
RHH5272_R3644
54.1
Terminal effector memory CD8 T-cell nTPM: 54.7
Samples: 4
Max nTPM: 65.4
Min nTPM: 49.3
RHH5232_R3604
65.4
RHH5204_R3575
49.3
RHH5261_R3633
50.1
RHH5296_R3662
54.0
Vd2 gdTCR nTPM: 60.4
Samples: 4
Max nTPM: 72.6
Min nTPM: 48.7
RHH5234_R3606
66.4
RHH5206_R3577
54.0
RHH5263_R3635
72.6
RHH5298_R3664
48.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
