We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
160.9
nTPM
Monaco:
103.2
nTPM
Schmiedel:
1155.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
160.9
HPA sample
nTPM
gdT-cell nTPM: 5.6
Samples: 6
Max nTPM: 8.0
Min nTPM: 1.8
P10809_1007
7.9
P10809_1022
5.3
P10809_1041
8.0
P10809_1060
6.3
P10809_1077
4.1
P10809_1098
1.8
MAIT T-cell nTPM: 5.7
Samples: 6
Max nTPM: 11.7
Min nTPM: 1.7
P10809_1006
1.7
P10809_1024
6.5
P10809_1043
4.4
P10809_1062
6.0
P10809_1083
3.7
P10809_1097
11.7
Memory CD4 T-cell nTPM: 46.6
Samples: 6
Max nTPM: 81.7
Min nTPM: 17.6
P10809_1014
44.6
P10809_1026
72.5
P10809_1045
81.7
P10809_1064
39.4
P10809_1086
17.6
P10809_1113
23.9
Memory CD8 T-cell nTPM: 14.7
Samples: 5
Max nTPM: 24.4
Min nTPM: 4.0
P10809_1012
16.0
P10809_1027
10.6
P10809_1046
24.4
P10809_1065
4.0
P10809_1111
18.4
Naive CD4 T-cell nTPM: 160.9
Samples: 6
Max nTPM: 678.9
Min nTPM: 40.7
P10809_1015
49.0
P10809_1030
94.0
P10809_1049
678.9
P10809_1068
57.9
P10809_1085
40.7
P10809_1112
45.0
Naive CD8 T-cell nTPM: 35.1
Samples: 6
Max nTPM: 63.7
Min nTPM: 3.7
P10809_1016
32.4
P10809_1031
63.7
P10809_1050
46.1
P10809_1069
23.5
P10809_1087
3.7
P10809_1110
41.0
T-reg nTPM: 91.1
Samples: 6
Max nTPM: 313.3
Min nTPM: 31.4
P10809_1018
36.1
P10809_1037
60.0
P10809_1056
313.3
P10809_1075
31.4
P10809_1094
36.3
P10809_1106
69.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 82.5
Samples: 4
Max nTPM: 109.8
Min nTPM: 34.5
RHH5202_R3573
82.7
RHH5230_R3602
109.8
RHH5259_R3631
103.1
RHH5288_R3660
34.5
Effector memory CD8 T-cell nTPM: 51.7
Samples: 4
Max nTPM: 56.7
Min nTPM: 41.3
RHH5203_R3574
54.7
RHH5231_R3603
54.0
RHH5260_R3632
56.7
RHH5289_R3661
41.3
MAIT T-cell nTPM: 45.7
Samples: 4
Max nTPM: 71.2
Min nTPM: 32.9
RHH5233_R3605
32.9
RHH5205_R3576
71.2
RHH5262_R3634
45.5
RHH5297_R3663
33.2
Memory CD4 T-cell TFH nTPM: 85.6
Samples: 4
Max nTPM: 149.3
Min nTPM: 42.9
RHH5300_R3666
85.0
RHH5236_R3608
149.3
RHH5265_R3637
42.9
RHH5208_R3579
65.1
Memory CD4 T-cell Th1 nTPM: 83.8
Samples: 4
Max nTPM: 126.1
Min nTPM: 50.9
RHH5210_R3581
50.9
RHH5302_R3668
64.9
RHH5238_R3610
93.3
RHH5267_R3639
126.1
Memory CD4 T-cell Th1/Th17 nTPM: 86.2
Samples: 4
Max nTPM: 121.0
Min nTPM: 46.5
RHH5303_R3669
46.5
RHH5211_R3582
120.1
RHH5239_R3611
57.0
RHH5268_R3640
121.0
Memory CD4 T-cell Th17 nTPM: 79.3
Samples: 4
Max nTPM: 131.8
Min nTPM: 38.2
RHH5304_R3670
43.9
RHH5212_R3583
131.8
RHH5240_R3612
38.2
RHH5269_R3641
103.2
Memory CD4 T-cell Th2 nTPM: 103.2
Samples: 4
Max nTPM: 143.9
Min nTPM: 73.1
RHH5305_R3671
75.8
RHH5213_R3584
119.9
RHH5241_R3613
73.1
RHH5270_R3642
143.9
Naive CD4 T-cell nTPM: 76.2
Samples: 4
Max nTPM: 107.0
Min nTPM: 29.7
RHH5306_R3672
89.8
RHH5214_R3585
107.0
RHH5242_R3614
29.7
RHH5271_R3643
78.1
Naive CD8 T-cell nTPM: 75.2
Samples: 4
Max nTPM: 88.9
Min nTPM: 56.8
RHH5201_R3572
56.8
RHH5229_R3601
88.9
RHH5258_R3630
86.1
RHH5287_R3659
69.0
Non-Vd2 gdTCR nTPM: 32.9
Samples: 4
Max nTPM: 57.5
Min nTPM: 18.7
RHH5235_R3607
57.5
RHH5264_R3636
18.7
RHH5207_R3578
28.5
RHH5299_R3665
26.9
T-reg nTPM: 92.0
Samples: 4
Max nTPM: 109.6
Min nTPM: 81.7
RHH5301_R3667
109.6
RHH5237_R3609
94.3
RHH5266_R3638
82.4
RHH5209_R3580
81.7
Terminal effector memory CD4 T-cell nTPM: 25.5
Samples: 2
Max nTPM: 29.3
Min nTPM: 21.7
RHH5243_R3615
29.3
RHH5272_R3644
21.7
Terminal effector memory CD8 T-cell nTPM: 30.7
Samples: 4
Max nTPM: 39.5
Min nTPM: 21.0
RHH5232_R3604
27.4
RHH5204_R3575
34.9
RHH5261_R3633
39.5
RHH5296_R3662
21.0
Vd2 gdTCR nTPM: 57.4
Samples: 4
Max nTPM: 68.1
Min nTPM: 43.3
RHH5234_R3606
68.1
RHH5206_R3577
52.9
RHH5263_R3635
43.3
RHH5298_R3664
65.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
