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  • RS1
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
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Retina
Brain methods
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Low
Inner nuclear layer: Not detected
Inner plexiform layer: Low
Limiting membrane: Not detected
Nerve fiber layer: Medium
Outer plexiform layer: Low
Photoreceptor cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:198.0 nTPM
GTEx:198.0 nTPM
FANTOM5:77.7 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA059546
Photoreceptor cells Medium
Limiting membrane Not detected
Outer plexiform layer Low
Inner nuclear layer Not detected
Inner plexiform layer Low
Ganglion cells Low
Nerve fiber layer Medium

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 198.0
Samples: 105

Max nTPM: 316.0
Min nTPM: 101.2
Std nTPM: 48.6
Median nTPM:
6_1 73 years, female 316.0
389_1 86 years, female 305.2
425_1 59 years, female 301.7
415_1 77 years, female 299.0
375_1 74 years, female 297.9
377_1 82 years, female 292.5
335_1 73 years, female 285.7
414_1 84 years, female 284.0
35_1 74 years, female 270.4
229_1 69 years, female 264.5
321_1 62 years, female 263.8
246_1 77 years, male 261.1
9_1 66 years, female 258.1
153_1 70 years, female 257.2
376_1 75 years, female 254.2
254_1 77 years, female 252.7
172_1 72 years, female 251.7
218_1 71 years, female 246.9
350_1 84 years, female 246.4
518_1 75 years, female 243.1
293_1 68 years, female 239.3
355_1 70 years, female 239.2
413_1 59 years, female 236.7
162_1 79 years, female 227.0
466_1 57 years, female 225.9
468_1 89 years, male 225.1
490_1 67 years, female 223.1
354_1 81 years, female 222.9
499_1 55 years, female 220.8
237_1 82 years, male 220.6
126_1 63 years, male 218.7
43_1 64 years, female 215.7
217_1 76 years, male 215.3
356_1 87 years, female 214.1
243_1 75 years, male 213.5
163_1 78 years, male 213.1
320_1 89 years, female 212.7
115_1 83 years, male 212.3
313_1 79 years, female 212.2
315_1 62 years, female 210.8
316_1 62 years, male 210.7
319_1 81 years, male 210.5
353_1 82 years, female 209.9
251_1 78 years, male 207.8
139_1 64 years, female 204.8
109_1 81 years, female 204.6
286_1 68 years, female 204.5
394_1 75 years, female 203.9
347_1 72 years, male 203.2
4_1 88 years, female 202.9
405_1 91 years, male 202.4
142_1 61 years, female 200.0
177_1 74 years, male 200.0
404_1 82 years, female 199.8
526_1 61 years, male 198.3
406_1 79 years, male 196.0
503_1 68 years, male 195.3
265_1 87 years, male 193.0
266_1 85 years, male 191.9
189_1 76 years, male 191.8
324_1 76 years, male 189.1
18_1 88 years, male 188.6
292_1 71 years, male 183.9
307_1 66 years, female 183.1
352_1 62 years, male 182.6
120_1 70 years, female 180.7
288_1 66 years, female 176.4
386_1 76 years, male 174.9
318_1 68 years, male 174.1
81_1 67 years, male 171.0
117_1 61 years, male 169.1
41_1 94 years, female 166.4
119_1 70 years, female 165.5
517_1 88 years, male 164.0
322_1 76 years, male 163.5
137_1 83 years, male 162.8
447_1 81 years, male 162.8
32_1 67 years, male 161.6
145_1 84 years, male 161.1
149_1 88 years, male 161.1
349_1 83 years, male 161.1
99_1 64 years, male 160.9
17_1 71 years, male 158.0
311_1 78 years, male 157.4
264_1 73 years, female 155.0
291_1 76 years, male 153.7
480_1 63 years, male 153.4
495_1 57 years, female 153.1
2_1 77 years, female 152.9
384_1 83 years, male 151.1
396_1 62 years, male 148.3
379_1 60 years, male 147.0
295_1 61 years, female 139.4
89_1 63 years, male 138.5
351_1 91 years, male 136.5
491_1 89 years, female 136.4
452_1 88 years, female 133.5
348_1 84 years, male 128.7
173_1 67 years, male 123.5
42_1 85 years, male 121.0
317_1 60 years, male 113.7
314_1 67 years, male 110.2
308_1 70 years, female 108.3
501_1 88 years, male 106.4
506_1 65 years, male 101.2
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 77.7
FF:10030-101E3 24-65 years, mixed 77.7

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