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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Low
Inner nuclear layer:
Not detected
Inner plexiform layer:
Low
Limiting membrane:
Not detected
Nerve fiber layer:
Medium
Outer plexiform layer:
Low
Photoreceptor cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
207.2
nTPM
GTEx:
207.2
nTPM
FANTOM5:
77.7
Scaled Tags Per Million
Pig:
279.6
nTPM
Mouse:
996.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA059546
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Low
Inner nuclear layer
Not detected
Inner plexiform layer
Low
Ganglion cells
Low
Nerve fiber layer
Medium
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
207.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 207.2
Samples: 105
Max nTPM: 329.5
Min nTPM: 105.4
Std nTPM: 50.9
Median nTPM:
6_1
73 years, female
329.5
389_1
86 years, female
319.8
415_1
77 years, female
318.6
425_1
59 years, female
312.9
375_1
74 years, female
311.3
377_1
82 years, female
304.5
414_1
84 years, female
299.3
335_1
73 years, female
296.3
35_1
74 years, female
284.3
229_1
69 years, female
278.1
246_1
77 years, male
274.5
321_1
62 years, female
271.8
153_1
70 years, female
270.8
9_1
66 years, female
270.0
254_1
77 years, female
265.7
376_1
75 years, female
264.5
172_1
72 years, female
262.2
218_1
71 years, female
257.4
350_1
84 years, female
256.3
518_1
75 years, female
253.8
413_1
59 years, female
251.7
293_1
68 years, female
249.2
355_1
70 years, female
249.0
466_1
57 years, female
239.8
162_1
79 years, female
239.6
468_1
89 years, male
237.6
490_1
67 years, female
232.4
354_1
81 years, female
231.5
499_1
55 years, female
231.1
126_1
63 years, male
230.1
237_1
82 years, male
230.1
43_1
64 years, female
227.7
217_1
76 years, male
225.3
243_1
75 years, male
223.3
313_1
79 years, female
222.8
356_1
87 years, female
222.6
115_1
83 years, male
222.5
315_1
62 years, female
221.9
320_1
89 years, female
221.7
163_1
78 years, male
220.8
316_1
62 years, male
218.5
353_1
82 years, female
218.3
319_1
81 years, male
217.4
251_1
78 years, male
217.0
139_1
64 years, female
214.9
109_1
81 years, female
213.8
4_1
88 years, female
212.9
286_1
68 years, female
212.8
394_1
75 years, female
212.5
405_1
91 years, male
212.5
142_1
61 years, female
212.1
347_1
72 years, male
211.6
404_1
82 years, female
209.3
526_1
61 years, male
207.9
177_1
74 years, male
206.9
406_1
79 years, male
203.6
503_1
68 years, male
203.3
265_1
87 years, male
202.7
266_1
85 years, male
201.4
189_1
76 years, male
200.6
18_1
88 years, male
198.4
324_1
76 years, male
198.1
307_1
66 years, female
192.2
292_1
71 years, male
192.1
120_1
70 years, female
190.0
352_1
62 years, male
188.9
288_1
66 years, female
185.3
318_1
68 years, male
182.4
386_1
76 years, male
182.4
81_1
67 years, male
180.5
117_1
61 years, male
177.4
119_1
70 years, female
173.9
41_1
94 years, female
173.4
517_1
88 years, male
172.4
137_1
83 years, male
170.7
322_1
76 years, male
170.5
32_1
67 years, male
170.2
447_1
81 years, male
169.9
149_1
88 years, male
169.7
145_1
84 years, male
169.0
99_1
64 years, male
167.7
349_1
83 years, male
166.9
311_1
78 years, male
165.6
17_1
71 years, male
165.4
264_1
73 years, female
161.7
495_1
57 years, female
161.7
291_1
76 years, male
161.6
480_1
63 years, male
160.4
2_1
77 years, female
159.8
384_1
83 years, male
157.4
396_1
62 years, male
155.0
379_1
60 years, male
152.2
89_1
63 years, male
146.2
295_1
61 years, female
144.8
491_1
89 years, female
143.8
351_1
91 years, male
141.9
452_1
88 years, female
138.2
348_1
84 years, male
133.3
173_1
67 years, male
128.3
42_1
85 years, male
125.9
317_1
60 years, male
117.8
314_1
67 years, male
115.1
308_1
70 years, female
114.0
501_1
88 years, male
112.4
506_1
65 years, male
105.4
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.