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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
27.3
nTPM
HPA Brain:
16.4
nTPM
GTEx:
27.3
nTPM
FANTOM5:
83.6
Scaled Tags Per Million
Pig:
3.1
nTPM
Mouse:
0.8
nTPM
Allen mouse:
2.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 14.2
2019
Male, age 18, unknown
20.4
2666
Male, age 74, left hemisphere
17.8
2586
Male, age 75, left hemisphere
16.6
2411
Female, age 72, unknown
15.8
1830
Male, age 51, unknown
14.3
1833
Male, age 53, unknown
13.7
2828
Female, age 72, unknown
12.7
1870
Female, age 42, unknown
12.2
1827
Male, age 72, unknown
12.0
2219
Male, age 76, both hemispheres
6.8
Dorsal raphe nucleus nTPM: 14.6
2047
Male, age 72, unknown
17.8
2750
Male, age 76, both hemispheres
17.2
1828
Male, age 53, unknown
14.3
2298
Female, age 72, unknown
12.8
2016
Female, age 72, unknown
11.1
Inferior colliculus nTPM: 13.4
2097
Female, age 72, unknown
14.7
2849
Male, age 72, unknown
14.4
1848
Female, age 42, unknown
13.2
1890
Male, age 53, unknown
11.2
Median raphe nucleus nTPM: 14.7
2220
Male, age 76, midline
14.7
Periaquaductal grey, anterior nTPM: 14.0
2502
Female, age 75, unknown
14.6
1947
Male, age 18, unknown
14.3
1795
Male, age 51, unknown
13.3
Periaquaductal grey, dorsal nTPM: 10.6
2464
Female, age 72, unknown
14.8
1831
Male, age 72, unknown
10.3
1840
Male, age 53, unknown
9.6
2850
Male, age 76, both hemispheres
7.8
Periaquaductal grey, lateral nTPM: 9.5
2272
Male, age 74, both hemispheres
11.3
2053
Male, age 18, unknown
9.1
2140
Male, age 76, both hemispheres
8.3
Pretectal area nTPM: 13.1
2007
Male, age 72, unknown
21.2
1817
Female, age 42, unknown
19.5
1816
Male, age 51, unknown
14.4
1944
Female, age 72, unknown
14.3
2316
Male, age 76, right hemisphere
12.7
2825
Male, age 18, unknown
12.3
2224
Female, age 72, unknown
11.9
2667
Female, age 75, unknown
11.7
1815
Male, age 53, unknown
11.2
2407
Male, age 75, both hemispheres
7.4
2273
Male, age 74, both hemispheres
7.3
Red nucleus nTPM: 16.4
2588
Male, age 74, left hemisphere
24.7
2823
Male, age 76, right hemisphere
20.9
1954
Female, age 42, unknown
17.7
1821
Female, age 72, unknown
17.4
2785
Male, age 18, unknown
16.7
2584
Male, age 75, left hemisphere
16.1
2503
Female, age 72, unknown
15.9
2769
Male, age 72, unknown
15.0
2725
Female, age 75, unknown
14.3
2227
Male, age 72, unknown
13.6
1865
Male, age 51, unknown
12.3
1904
Male, age 53, unknown
12.3
Substantia nigra nTPM: 14.5
2665
Male, age 74, both hemispheres
25.7
1916
Female, age 42, unknown
18.1
1941
Male, age 53, unknown
16.4
1851
Male, age 51, unknown
15.8
1889
Female, age 72, unknown
14.9
2590
Female, age 75, unknown
13.0
2241
Male, age 72, unknown
11.6
2583
Male, age 75, right hemisphere
11.6
2699
Male, age 18, unknown
10.7
2409
Female, age 72, unknown
7.9
Superior colliculus nTPM: 11.7
1796
Male, age 53, unknown
15.7
2587
Male, age 74, left hemisphere
15.4
2668
Female, age 75, unknown
14.2
1839
Male, age 51, unknown
13.5
2087
Female, age 72, unknown
12.1
1895
Male, age 76, right hemisphere
10.5
2261
Male, age 18, unknown
9.9
1913
Female, age 42, unknown
9.4
1995
Male, age 72, unknown
8.8
2664
Male, age 75, both hemispheres
7.6
Ventral tegmental area nTPM: 14.6
2223
Female, age 72, unknown
17.3
2021
Male, age 53, unknown
16.8
2218
Male, age 76, both hemispheres
16.1
2410
Female, age 72, unknown
13.2
1942
Male, age 51, unknown
12.5
1915
Female, age 42, unknown
11.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 27.3
Samples: 139
Max nTPM: 215.8
Min nTPM: 2.7
Std nTPM: 34.7
Median nTPM: 15.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
215.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
205.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
182.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
111.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
102.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
99.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
91.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
80.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
79.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
73.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
71.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
71.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
70.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
66.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
62.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
61.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
60.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
60.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
54.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
53.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
49.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
48.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
46.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
46.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
46.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
41.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
39.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
39.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
39.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
38.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
36.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
36.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
34.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
34.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
34.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
33.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
32.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
32.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
30.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
30.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
29.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
29.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
28.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
26.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
26.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
24.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
23.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
23.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
23.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
23.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
22.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
22.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
21.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
20.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
20.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
20.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
20.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
20.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
18.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
18.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
17.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
17.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
16.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
16.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
16.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
16.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
15.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
15.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
15.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
14.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
14.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
14.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
13.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
12.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
11.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
11.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
11.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
11.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
10.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
9.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
8.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
8.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
7.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
7.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
7.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
7.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
6.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
6.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
6.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
6.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
6.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
6.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
5.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
5.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
5.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
5.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
5.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
5.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
5.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
5.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
4.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
4.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
4.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
4.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
4.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
4.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
4.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
4.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
3.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
3.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
3.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
2.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
2.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.8
Samples: 4
Max nTPM: 1.0
Min nTPM: 0.6
Sample A
Male
0.6
Sample B
Male
0.9
Sample C
Female
1.0
Sample D
Female
0.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.