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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.3
nTPM
Monaco:
122.6
nTPM
Schmiedel:
296.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.3
HPA sample
nTPM
gdT-cell nTPM: 66.4
Samples: 6
Max nTPM: 82.8
Min nTPM: 51.5
P10809_1007
51.5
P10809_1022
76.1
P10809_1041
82.8
P10809_1060
73.2
P10809_1077
60.6
P10809_1098
54.4
MAIT T-cell nTPM: 77.0
Samples: 6
Max nTPM: 86.3
Min nTPM: 58.6
P10809_1006
58.6
P10809_1024
86.0
P10809_1043
79.7
P10809_1062
86.3
P10809_1083
68.6
P10809_1097
82.6
Memory CD4 T-cell nTPM: 59.9
Samples: 6
Max nTPM: 68.4
Min nTPM: 49.5
P10809_1014
49.5
P10809_1026
56.3
P10809_1045
63.8
P10809_1064
59.0
P10809_1086
62.5
P10809_1113
68.4
Memory CD8 T-cell nTPM: 67.8
Samples: 5
Max nTPM: 77.3
Min nTPM: 58.3
P10809_1012
58.3
P10809_1027
62.9
P10809_1046
75.2
P10809_1065
77.3
P10809_1111
65.1
Naive CD4 T-cell nTPM: 69.2
Samples: 6
Max nTPM: 79.3
Min nTPM: 54.6
P10809_1015
54.6
P10809_1030
79.3
P10809_1049
71.5
P10809_1068
77.7
P10809_1085
63.0
P10809_1112
69.0
Naive CD8 T-cell nTPM: 70.7
Samples: 6
Max nTPM: 82.5
Min nTPM: 61.4
P10809_1016
66.8
P10809_1031
68.2
P10809_1050
82.5
P10809_1069
69.1
P10809_1087
61.4
P10809_1110
75.9
T-reg nTPM: 77.4
Samples: 6
Max nTPM: 106.9
Min nTPM: 49.4
P10809_1018
49.4
P10809_1037
87.3
P10809_1056
64.6
P10809_1075
79.4
P10809_1094
76.5
P10809_1106
106.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 94.8
Samples: 4
Max nTPM: 125.3
Min nTPM: 68.8
RHH5202_R3573
125.3
RHH5230_R3602
75.8
RHH5259_R3631
68.8
RHH5288_R3660
109.4
Effector memory CD8 T-cell nTPM: 94.5
Samples: 4
Max nTPM: 143.7
Min nTPM: 50.0
RHH5203_R3574
143.7
RHH5231_R3603
75.0
RHH5260_R3632
50.0
RHH5289_R3661
109.3
MAIT T-cell nTPM: 119.4
Samples: 4
Max nTPM: 147.3
Min nTPM: 78.0
RHH5233_R3605
119.9
RHH5205_R3576
78.0
RHH5262_R3634
147.3
RHH5297_R3663
132.4
Memory CD4 T-cell TFH nTPM: 116.2
Samples: 4
Max nTPM: 149.3
Min nTPM: 88.7
RHH5300_R3666
88.7
RHH5236_R3608
115.5
RHH5265_R3637
149.3
RHH5208_R3579
111.4
Memory CD4 T-cell Th1 nTPM: 85.7
Samples: 4
Max nTPM: 120.8
Min nTPM: 40.1
RHH5210_R3581
120.8
RHH5302_R3668
117.2
RHH5238_R3610
40.1
RHH5267_R3639
64.8
Memory CD4 T-cell Th1/Th17 nTPM: 90.9
Samples: 4
Max nTPM: 145.8
Min nTPM: 41.4
RHH5303_R3669
145.8
RHH5211_R3582
96.0
RHH5239_R3611
41.4
RHH5268_R3640
80.3
Memory CD4 T-cell Th17 nTPM: 90.8
Samples: 4
Max nTPM: 129.4
Min nTPM: 51.6
RHH5304_R3670
85.9
RHH5212_R3583
129.4
RHH5240_R3612
51.6
RHH5269_R3641
96.2
Memory CD4 T-cell Th2 nTPM: 114.2
Samples: 4
Max nTPM: 137.3
Min nTPM: 91.6
RHH5305_R3671
91.6
RHH5213_R3584
113.7
RHH5241_R3613
137.3
RHH5270_R3642
114.1
Naive CD4 T-cell nTPM: 110.4
Samples: 4
Max nTPM: 121.4
Min nTPM: 83.5
RHH5306_R3672
115.8
RHH5214_R3585
121.4
RHH5242_R3614
120.7
RHH5271_R3643
83.5
Naive CD8 T-cell nTPM: 116.3
Samples: 4
Max nTPM: 166.5
Min nTPM: 31.5
RHH5201_R3572
146.2
RHH5229_R3601
31.5
RHH5258_R3630
166.5
RHH5287_R3659
120.8
Non-Vd2 gdTCR nTPM: 117.3
Samples: 4
Max nTPM: 155.2
Min nTPM: 66.9
RHH5235_R3607
66.9
RHH5264_R3636
144.1
RHH5207_R3578
155.2
RHH5299_R3665
102.9
T-reg nTPM: 107.0
Samples: 4
Max nTPM: 123.3
Min nTPM: 100.4
RHH5301_R3667
123.3
RHH5237_R3609
101.1
RHH5266_R3638
100.4
RHH5209_R3580
103.3
Terminal effector memory CD4 T-cell nTPM: 118.8
Samples: 2
Max nTPM: 167.5
Min nTPM: 70.0
RHH5243_R3615
70.0
RHH5272_R3644
167.5
Terminal effector memory CD8 T-cell nTPM: 122.6
Samples: 4
Max nTPM: 160.3
Min nTPM: 88.3
RHH5232_R3604
140.3
RHH5204_R3575
160.3
RHH5261_R3633
88.3
RHH5296_R3662
101.3
Vd2 gdTCR nTPM: 103.6
Samples: 4
Max nTPM: 123.7
Min nTPM: 82.7
RHH5234_R3606
115.5
RHH5206_R3577
123.7
RHH5263_R3635
82.7
RHH5298_R3664
92.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
