We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
KCTD17
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • KCTD17
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:63.9 nTPM
HPA Brain:85.6 nTPM
GTEx:63.9 nTPM
FANTOM5:58.3 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:171.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.6
Sample id Sample description nTPM
Amygdala
nTPM: 82.4
2814 Male, age 76, right hemisphere 176.7
2517 Female, age 94, left hemisphere 64.5
2695 Female, age 67, right hemisphere 63.4
1987 Female, age 91, left hemisphere 57.4
2514 Male, age 75, right hemisphere 50.0
Basal amygdala
nTPM: 83.2
1955 Male, age 76, both hemispheres 111.5
2827 Female, age 67, right hemisphere 89.2
2685 Female, age 94, left hemisphere 81.3
2243 Female, age 91, right hemisphere 79.5
2609 Male, age 75, right hemisphere 73.3
2110 Male, age 80, left hemisphere 64.6
Central amygdala
nTPM: 85.6
1905 Male, age 76, both hemispheres 181.9
2826 Female, age 94, left hemisphere 75.0
2515 Male, age 75, right hemisphere 61.7
2239 Male, age 80, left hemisphere 60.9
2701 Female, age 91, right hemisphere 48.5
Corticomedial amygdala
nTPM: 75.1
2240 Male, age 76, both hemispheres 82.3
2535 Female, age 67, right hemisphere 81.3
2829 Male, age 80, left hemisphere 76.9
2242 Female, age 91, right hemisphere 72.4
2429 Female, age 94, left hemisphere 71.4
2428 Male, age 75, right hemisphere 66.1
Lateral amygdala
nTPM: 76.7
1883 Male, age 76, both hemispheres 145.0
2534 Female, age 94, left hemisphere 79.6
2830 Female, age 67, right hemisphere 64.9
2256 Male, age 80, left hemisphere 59.6
2255 Female, age 91, right hemisphere 56.6
2516 Male, age 75, right hemisphere 54.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 63.9
Samples: 181

Max nTPM: 157.7
Min nTPM: 28.0
Std nTPM: 19.4
Median nTPM: 62.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 157.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 129.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 120.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 115.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 114.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 113.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 102.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 101.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 100.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 98.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 98.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 97.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 91.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 89.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 89.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 87.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 85.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 85.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 84.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 83.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 83.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 83.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 82.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 82.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 82.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 81.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 80.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 80.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 80.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 79.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 78.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 78.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 76.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 76.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 75.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 75.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 75.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 73.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 72.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 72.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 72.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 72.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 72.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 72.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 71.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 71.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 71.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 70.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 70.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 70.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 70.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 69.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 69.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 69.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 69.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 69.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 69.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 69.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 68.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 68.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 68.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 68.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 68.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 68.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 68.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 68.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 67.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 67.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 67.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 66.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 66.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 66.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 65.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 65.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 64.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 64.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 64.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 64.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 64.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 63.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 63.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 63.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 62.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 62.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 62.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 62.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 62.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 62.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 62.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 62.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 62.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 61.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 61.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 61.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 60.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 60.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 60.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 59.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 59.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 58.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 58.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 58.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 58.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 58.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 58.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 58.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 57.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 57.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 57.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 56.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 55.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 54.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 54.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 53.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 53.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 53.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 53.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 53.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 53.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 52.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 52.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 51.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 51.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 50.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 50.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 50.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 50.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 50.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 50.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 50.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 49.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 49.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 49.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 48.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 48.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 48.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 48.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 48.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 48.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 48.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 47.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 47.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 46.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 46.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 46.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 44.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 44.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 44.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 44.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 43.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 43.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 42.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 40.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 40.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 40.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 39.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 38.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 38.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 38.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 37.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 35.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 35.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 34.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 33.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 32.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 29.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 58.3
FF:10151-102I7 76 years, female 58.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.5
Pig sample Sample description nTPM
Amygdala
nTPM: 22.5
Samples: 4

Max nTPM: 31.6
Min nTPM: 17.6
Sample A Female 31.6
Sample B Female 17.6
Sample C Male 21.7
Sample D Male 19.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 171.7
Samples: 4

Max nTPM: 218.3
Min nTPM: 144.9
Sample A Male 144.9
Sample B Male 157.3
Sample C Female 218.3
Sample D Female 166.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo