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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.5
nTPM
Monaco:
69.3
nTPM
Schmiedel:
31.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.5
HPA sample
nTPM
gdT-cell nTPM: 39.9
Samples: 6
Max nTPM: 50.3
Min nTPM: 34.3
P10809_1007
37.2
P10809_1022
43.6
P10809_1041
50.3
P10809_1060
34.3
P10809_1077
39.7
P10809_1098
34.5
MAIT T-cell nTPM: 55.5
Samples: 6
Max nTPM: 75.7
Min nTPM: 39.3
P10809_1006
48.6
P10809_1024
75.7
P10809_1043
49.2
P10809_1062
52.9
P10809_1083
39.3
P10809_1097
67.5
Memory CD4 T-cell nTPM: 36.7
Samples: 6
Max nTPM: 47.6
Min nTPM: 30.7
P10809_1014
34.2
P10809_1026
32.1
P10809_1045
47.6
P10809_1064
30.7
P10809_1086
36.1
P10809_1113
39.5
Memory CD8 T-cell nTPM: 40.5
Samples: 5
Max nTPM: 48.8
Min nTPM: 34.0
P10809_1012
34.0
P10809_1027
36.6
P10809_1046
43.0
P10809_1065
40.0
P10809_1111
48.8
Naive CD4 T-cell nTPM: 38.0
Samples: 6
Max nTPM: 48.9
Min nTPM: 29.9
P10809_1015
32.6
P10809_1030
38.7
P10809_1049
48.9
P10809_1068
29.9
P10809_1085
43.8
P10809_1112
34.1
Naive CD8 T-cell nTPM: 36.1
Samples: 6
Max nTPM: 44.5
Min nTPM: 30.2
P10809_1016
35.8
P10809_1031
30.2
P10809_1050
44.5
P10809_1069
36.5
P10809_1087
36.5
P10809_1110
33.3
T-reg nTPM: 45.8
Samples: 6
Max nTPM: 60.1
Min nTPM: 23.5
P10809_1018
60.1
P10809_1037
50.0
P10809_1056
23.5
P10809_1075
56.5
P10809_1094
35.2
P10809_1106
49.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 56.0
Samples: 4
Max nTPM: 72.6
Min nTPM: 41.4
RHH5202_R3573
58.3
RHH5230_R3602
72.6
RHH5259_R3631
41.4
RHH5288_R3660
51.8
Effector memory CD8 T-cell nTPM: 69.3
Samples: 4
Max nTPM: 93.5
Min nTPM: 47.7
RHH5203_R3574
67.7
RHH5231_R3603
68.1
RHH5260_R3632
47.7
RHH5289_R3661
93.5
MAIT T-cell nTPM: 65.5
Samples: 4
Max nTPM: 71.5
Min nTPM: 57.3
RHH5233_R3605
66.8
RHH5205_R3576
57.3
RHH5262_R3634
66.4
RHH5297_R3663
71.5
Memory CD4 T-cell TFH nTPM: 55.3
Samples: 4
Max nTPM: 58.3
Min nTPM: 52.0
RHH5300_R3666
58.3
RHH5236_R3608
54.1
RHH5265_R3637
56.8
RHH5208_R3579
52.0
Memory CD4 T-cell Th1 nTPM: 52.4
Samples: 4
Max nTPM: 61.0
Min nTPM: 47.7
RHH5210_R3581
47.7
RHH5302_R3668
61.0
RHH5238_R3610
51.0
RHH5267_R3639
49.9
Memory CD4 T-cell Th1/Th17 nTPM: 48.5
Samples: 4
Max nTPM: 68.2
Min nTPM: 40.8
RHH5303_R3669
68.2
RHH5211_R3582
43.9
RHH5239_R3611
40.8
RHH5268_R3640
41.2
Memory CD4 T-cell Th17 nTPM: 59.4
Samples: 4
Max nTPM: 74.3
Min nTPM: 44.1
RHH5304_R3670
61.9
RHH5212_R3583
57.3
RHH5240_R3612
74.3
RHH5269_R3641
44.1
Memory CD4 T-cell Th2 nTPM: 64.2
Samples: 4
Max nTPM: 72.2
Min nTPM: 60.6
RHH5305_R3671
62.1
RHH5213_R3584
62.0
RHH5241_R3613
72.2
RHH5270_R3642
60.6
Naive CD4 T-cell nTPM: 54.0
Samples: 4
Max nTPM: 61.8
Min nTPM: 45.9
RHH5306_R3672
50.0
RHH5214_R3585
45.9
RHH5242_R3614
61.8
RHH5271_R3643
58.4
Naive CD8 T-cell nTPM: 51.8
Samples: 4
Max nTPM: 67.6
Min nTPM: 32.2
RHH5201_R3572
66.5
RHH5229_R3601
32.2
RHH5258_R3630
40.8
RHH5287_R3659
67.6
Non-Vd2 gdTCR nTPM: 67.5
Samples: 4
Max nTPM: 79.7
Min nTPM: 50.9
RHH5235_R3607
72.5
RHH5264_R3636
79.7
RHH5207_R3578
50.9
RHH5299_R3665
66.9
T-reg nTPM: 58.6
Samples: 4
Max nTPM: 75.4
Min nTPM: 50.2
RHH5301_R3667
50.2
RHH5237_R3609
75.4
RHH5266_R3638
58.3
RHH5209_R3580
50.5
Terminal effector memory CD4 T-cell nTPM: 55.5
Samples: 2
Max nTPM: 67.3
Min nTPM: 43.6
RHH5243_R3615
67.3
RHH5272_R3644
43.6
Terminal effector memory CD8 T-cell nTPM: 66.6
Samples: 4
Max nTPM: 77.6
Min nTPM: 62.5
RHH5232_R3604
62.5
RHH5204_R3575
62.5
RHH5261_R3633
63.6
RHH5296_R3662
77.6
Vd2 gdTCR nTPM: 60.2
Samples: 4
Max nTPM: 73.1
Min nTPM: 54.2
RHH5234_R3606
58.7
RHH5206_R3577
73.1
RHH5263_R3635
54.6
RHH5298_R3664
54.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
