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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
541.1
nTPM
Monaco:
145.1
nTPM
Schmiedel:
101.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
541.1
HPA sample
nTPM
gdT-cell nTPM: 315.5
Samples: 6
Max nTPM: 381.5
Min nTPM: 173.0
P10809_1007
173.0
P10809_1022
368.1
P10809_1041
369.5
P10809_1060
263.8
P10809_1077
381.5
P10809_1098
337.3
MAIT T-cell nTPM: 248.2
Samples: 6
Max nTPM: 386.6
Min nTPM: 122.8
P10809_1006
122.8
P10809_1024
240.2
P10809_1043
276.6
P10809_1062
236.0
P10809_1083
227.2
P10809_1097
386.6
Memory CD4 T-cell nTPM: 431.3
Samples: 6
Max nTPM: 533.9
Min nTPM: 248.5
P10809_1014
248.5
P10809_1026
520.8
P10809_1045
419.8
P10809_1064
475.6
P10809_1086
388.9
P10809_1113
533.9
Memory CD8 T-cell nTPM: 309.3
Samples: 5
Max nTPM: 394.9
Min nTPM: 202.1
P10809_1012
202.1
P10809_1027
268.1
P10809_1046
394.9
P10809_1065
302.4
P10809_1111
378.9
Naive CD4 T-cell nTPM: 327.0
Samples: 6
Max nTPM: 427.3
Min nTPM: 177.1
P10809_1015
177.1
P10809_1030
340.4
P10809_1049
427.3
P10809_1068
292.8
P10809_1085
347.5
P10809_1112
376.8
Naive CD8 T-cell nTPM: 265.1
Samples: 6
Max nTPM: 319.8
Min nTPM: 190.3
P10809_1016
190.3
P10809_1031
270.0
P10809_1050
237.8
P10809_1069
319.8
P10809_1087
271.0
P10809_1110
301.9
T-reg nTPM: 541.1
Samples: 6
Max nTPM: 791.5
Min nTPM: 337.0
P10809_1018
337.0
P10809_1037
412.9
P10809_1056
791.5
P10809_1075
550.7
P10809_1094
556.6
P10809_1106
597.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
145.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 81.5
Samples: 4
Max nTPM: 147.5
Min nTPM: 49.1
RHH5202_R3573
62.9
RHH5230_R3602
49.1
RHH5259_R3631
66.5
RHH5288_R3660
147.5
Effector memory CD8 T-cell nTPM: 67.8
Samples: 4
Max nTPM: 91.2
Min nTPM: 46.6
RHH5203_R3574
52.5
RHH5231_R3603
81.0
RHH5260_R3632
91.2
RHH5289_R3661
46.6
MAIT T-cell nTPM: 69.2
Samples: 4
Max nTPM: 74.9
Min nTPM: 61.9
RHH5233_R3605
68.2
RHH5205_R3576
61.9
RHH5262_R3634
74.9
RHH5297_R3663
71.6
Memory CD4 T-cell TFH nTPM: 145.1
Samples: 4
Max nTPM: 241.1
Min nTPM: 102.9
RHH5300_R3666
122.6
RHH5236_R3608
241.1
RHH5265_R3637
102.9
RHH5208_R3579
113.9
Memory CD4 T-cell Th1 nTPM: 139.7
Samples: 4
Max nTPM: 235.6
Min nTPM: 82.9
RHH5210_R3581
82.9
RHH5302_R3668
235.6
RHH5238_R3610
138.0
RHH5267_R3639
102.1
Memory CD4 T-cell Th1/Th17 nTPM: 125.6
Samples: 4
Max nTPM: 175.7
Min nTPM: 73.2
RHH5303_R3669
175.7
RHH5211_R3582
128.3
RHH5239_R3611
73.2
RHH5268_R3640
125.3
Memory CD4 T-cell Th17 nTPM: 114.0
Samples: 4
Max nTPM: 146.1
Min nTPM: 96.5
RHH5304_R3670
109.4
RHH5212_R3583
146.1
RHH5240_R3612
103.9
RHH5269_R3641
96.5
Memory CD4 T-cell Th2 nTPM: 124.9
Samples: 4
Max nTPM: 154.9
Min nTPM: 95.3
RHH5305_R3671
129.1
RHH5213_R3584
120.2
RHH5241_R3613
154.9
RHH5270_R3642
95.3
Naive CD4 T-cell nTPM: 105.8
Samples: 4
Max nTPM: 168.0
Min nTPM: 72.6
RHH5306_R3672
103.7
RHH5214_R3585
168.0
RHH5242_R3614
78.7
RHH5271_R3643
72.6
Naive CD8 T-cell nTPM: 69.3
Samples: 4
Max nTPM: 93.6
Min nTPM: 49.3
RHH5201_R3572
60.2
RHH5229_R3601
49.3
RHH5258_R3630
93.6
RHH5287_R3659
73.9
Non-Vd2 gdTCR nTPM: 78.9
Samples: 4
Max nTPM: 124.3
Min nTPM: 44.0
RHH5235_R3607
44.0
RHH5264_R3636
53.4
RHH5207_R3578
93.8
RHH5299_R3665
124.3
T-reg nTPM: 141.1
Samples: 4
Max nTPM: 197.3
Min nTPM: 81.8
RHH5301_R3667
197.3
RHH5237_R3609
171.1
RHH5266_R3638
81.8
RHH5209_R3580
114.3
Terminal effector memory CD4 T-cell nTPM: 52.3
Samples: 2
Max nTPM: 79.8
Min nTPM: 24.7
RHH5243_R3615
79.8
RHH5272_R3644
24.7
Terminal effector memory CD8 T-cell nTPM: 109.3
Samples: 4
Max nTPM: 183.1
Min nTPM: 71.6
RHH5232_R3604
109.6
RHH5204_R3575
183.1
RHH5261_R3633
72.8
RHH5296_R3662
71.6
Vd2 gdTCR nTPM: 117.2
Samples: 4
Max nTPM: 163.6
Min nTPM: 67.8
RHH5234_R3606
98.8
RHH5206_R3577
163.6
RHH5263_R3635
67.8
RHH5298_R3664
138.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
