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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.3
nTPM
Monaco:
19.1
nTPM
Schmiedel:
15.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.3
HPA sample
nTPM
gdT-cell nTPM: 10.6
Samples: 6
Max nTPM: 17.2
Min nTPM: 4.9
P10809_1007
7.6
P10809_1022
15.1
P10809_1041
4.9
P10809_1060
9.8
P10809_1077
9.0
P10809_1098
17.2
MAIT T-cell nTPM: 11.2
Samples: 6
Max nTPM: 21.0
Min nTPM: 5.7
P10809_1006
6.0
P10809_1024
21.0
P10809_1043
11.8
P10809_1062
5.7
P10809_1083
8.9
P10809_1097
13.6
Memory CD4 T-cell nTPM: 9.8
Samples: 6
Max nTPM: 16.2
Min nTPM: 5.9
P10809_1014
5.9
P10809_1026
8.7
P10809_1045
16.2
P10809_1064
8.3
P10809_1086
12.0
P10809_1113
7.8
Memory CD8 T-cell nTPM: 12.3
Samples: 5
Max nTPM: 19.5
Min nTPM: 6.4
P10809_1012
7.7
P10809_1027
19.5
P10809_1046
13.3
P10809_1065
6.4
P10809_1111
14.4
Naive CD4 T-cell nTPM: 8.4
Samples: 6
Max nTPM: 11.1
Min nTPM: 5.1
P10809_1015
5.1
P10809_1030
11.0
P10809_1049
11.1
P10809_1068
8.1
P10809_1085
6.6
P10809_1112
8.7
Naive CD8 T-cell nTPM: 10.6
Samples: 6
Max nTPM: 16.8
Min nTPM: 5.3
P10809_1016
5.3
P10809_1031
16.8
P10809_1050
12.0
P10809_1069
8.5
P10809_1087
8.1
P10809_1110
12.7
T-reg nTPM: 6.5
Samples: 6
Max nTPM: 10.9
Min nTPM: 0.0
P10809_1018
5.2
P10809_1037
10.6
P10809_1056
0.0
P10809_1075
7.3
P10809_1094
4.8
P10809_1106
10.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 13.1
Samples: 4
Max nTPM: 16.5
Min nTPM: 4.8
RHH5202_R3573
16.0
RHH5230_R3602
16.5
RHH5259_R3631
14.9
RHH5288_R3660
4.8
Effector memory CD8 T-cell nTPM: 19.1
Samples: 4
Max nTPM: 24.6
Min nTPM: 12.4
RHH5203_R3574
21.2
RHH5231_R3603
12.4
RHH5260_R3632
24.6
RHH5289_R3661
18.2
MAIT T-cell nTPM: 18.6
Samples: 4
Max nTPM: 23.9
Min nTPM: 12.9
RHH5233_R3605
22.8
RHH5205_R3576
12.9
RHH5262_R3634
23.9
RHH5297_R3663
14.8
Memory CD4 T-cell TFH nTPM: 13.8
Samples: 4
Max nTPM: 18.4
Min nTPM: 9.7
RHH5300_R3666
15.4
RHH5236_R3608
9.7
RHH5265_R3637
18.4
RHH5208_R3579
11.5
Memory CD4 T-cell Th1 nTPM: 11.6
Samples: 4
Max nTPM: 16.8
Min nTPM: 6.1
RHH5210_R3581
14.6
RHH5302_R3668
8.7
RHH5238_R3610
16.8
RHH5267_R3639
6.1
Memory CD4 T-cell Th1/Th17 nTPM: 13.3
Samples: 4
Max nTPM: 16.6
Min nTPM: 7.7
RHH5303_R3669
13.8
RHH5211_R3582
16.6
RHH5239_R3611
7.7
RHH5268_R3640
15.2
Memory CD4 T-cell Th17 nTPM: 16.8
Samples: 4
Max nTPM: 21.3
Min nTPM: 12.4
RHH5304_R3670
12.4
RHH5212_R3583
21.3
RHH5240_R3612
16.4
RHH5269_R3641
17.2
Memory CD4 T-cell Th2 nTPM: 13.2
Samples: 4
Max nTPM: 20.0
Min nTPM: 5.9
RHH5305_R3671
20.0
RHH5213_R3584
7.2
RHH5241_R3613
5.9
RHH5270_R3642
19.8
Naive CD4 T-cell nTPM: 11.2
Samples: 4
Max nTPM: 15.8
Min nTPM: 6.7
RHH5306_R3672
15.8
RHH5214_R3585
15.1
RHH5242_R3614
6.7
RHH5271_R3643
7.0
Naive CD8 T-cell nTPM: 12.1
Samples: 4
Max nTPM: 14.8
Min nTPM: 10.3
RHH5201_R3572
14.8
RHH5229_R3601
10.3
RHH5258_R3630
12.0
RHH5287_R3659
11.2
Non-Vd2 gdTCR nTPM: 15.6
Samples: 4
Max nTPM: 21.1
Min nTPM: 7.1
RHH5235_R3607
7.1
RHH5264_R3636
19.7
RHH5207_R3578
21.1
RHH5299_R3665
14.3
T-reg nTPM: 13.7
Samples: 4
Max nTPM: 16.0
Min nTPM: 8.4
RHH5301_R3667
15.5
RHH5237_R3609
8.4
RHH5266_R3638
16.0
RHH5209_R3580
14.9
Terminal effector memory CD4 T-cell nTPM: 10.2
Samples: 2
Max nTPM: 13.7
Min nTPM: 6.6
RHH5243_R3615
13.7
RHH5272_R3644
6.6
Terminal effector memory CD8 T-cell nTPM: 8.0
Samples: 4
Max nTPM: 14.9
Min nTPM: 3.1
RHH5232_R3604
14.9
RHH5204_R3575
4.9
RHH5261_R3633
9.0
RHH5296_R3662
3.1
Vd2 gdTCR nTPM: 18.3
Samples: 4
Max nTPM: 21.9
Min nTPM: 14.2
RHH5234_R3606
21.9
RHH5206_R3577
16.3
RHH5263_R3635
14.2
RHH5298_R3664
20.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
