We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DDX17
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • DDX17
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:316.8 nTPM
GTEx:316.8 nTPM
FANTOM5:484.2 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 316.8
Samples: 105

Max nTPM: 521.5
Min nTPM: 168.0
Std nTPM: 68.2
Median nTPM:
142_1 61 years, female 521.5
162_1 79 years, female 494.4
491_1 89 years, female 493.0
119_1 70 years, female 462.1
35_1 74 years, female 445.6
32_1 67 years, male 426.5
109_1 81 years, female 425.6
117_1 61 years, male 415.9
490_1 67 years, female 410.1
42_1 85 years, male 402.5
313_1 79 years, female 400.3
315_1 62 years, female 389.5
379_1 60 years, male 385.9
415_1 77 years, female 384.6
6_1 73 years, female 383.4
501_1 88 years, male 381.4
81_1 67 years, male 379.1
139_1 64 years, female 378.5
89_1 63 years, male 372.6
153_1 70 years, female 371.7
149_1 88 years, male 371.5
43_1 64 years, female 371.1
414_1 84 years, female 369.2
396_1 62 years, male 368.6
4_1 88 years, female 367.8
413_1 59 years, female 362.8
120_1 70 years, female 360.8
375_1 74 years, female 359.7
499_1 55 years, female 359.2
307_1 66 years, female 356.4
466_1 57 years, female 354.9
314_1 67 years, male 352.3
266_1 85 years, male 350.9
99_1 64 years, male 345.6
17_1 71 years, male 344.6
126_1 63 years, male 343.7
115_1 83 years, male 341.7
41_1 94 years, female 341.2
317_1 60 years, male 338.2
145_1 84 years, male 336.2
447_1 81 years, male 335.8
137_1 83 years, male 334.2
354_1 81 years, female 332.3
324_1 76 years, male 332.2
495_1 57 years, female 330.9
349_1 83 years, male 330.2
217_1 76 years, male 329.1
311_1 78 years, male 324.5
18_1 88 years, male 323.9
394_1 75 years, female 319.2
347_1 72 years, male 318.7
288_1 66 years, female 315.1
229_1 69 years, female 314.6
348_1 84 years, male 314.4
237_1 82 years, male 311.4
389_1 86 years, female 310.6
265_1 87 years, male 306.4
518_1 75 years, female 305.3
404_1 82 years, female 303.3
173_1 67 years, male 302.4
335_1 73 years, female 301.2
264_1 73 years, female 297.9
350_1 84 years, female 296.8
468_1 89 years, male 291.7
322_1 76 years, male 290.2
319_1 81 years, male 289.5
503_1 68 years, male 285.5
218_1 71 years, female 285.1
9_1 66 years, female 283.0
452_1 88 years, female 282.9
286_1 68 years, female 278.3
355_1 70 years, female 278.0
318_1 68 years, male 277.2
189_1 76 years, male 272.9
506_1 65 years, male 272.6
316_1 62 years, male 263.2
526_1 61 years, male 263.1
243_1 75 years, male 263.0
295_1 61 years, female 262.8
352_1 62 years, male 262.7
386_1 76 years, male 261.0
351_1 91 years, male 259.3
405_1 91 years, male 258.5
2_1 77 years, female 257.6
308_1 70 years, female 257.6
246_1 77 years, male 257.5
254_1 77 years, female 257.1
517_1 88 years, male 257.0
291_1 76 years, male 255.7
384_1 83 years, male 251.8
172_1 72 years, female 250.5
376_1 75 years, female 249.6
320_1 89 years, female 241.6
406_1 79 years, male 241.6
353_1 82 years, female 238.7
356_1 87 years, female 237.3
425_1 59 years, female 235.8
321_1 62 years, female 227.3
292_1 71 years, male 225.6
480_1 63 years, male 202.9
251_1 78 years, male 200.5
177_1 74 years, male 200.4
377_1 82 years, female 185.6
163_1 78 years, male 178.4
293_1 68 years, female 168.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

484.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 484.2
FF:10030-101E3 24-65 years, mixed 484.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo