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  • LGALS1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:404.1 nTPM
HPA Brain:221.5 nTPM
GTEx:404.1 nTPM
FANTOM5:122.9 Scaled Tags Per Million
Pig:126.5 nTPM
Mouse:39.8 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.5
Sample id Sample description nTPM
Amygdala
nTPM: 221.5
2814 Male, age 76, right hemisphere 261.1
2695 Female, age 67, right hemisphere 236.5
1987 Female, age 91, left hemisphere 227.0
2514 Male, age 75, right hemisphere 211.4
2517 Female, age 94, left hemisphere 171.4
Basal amygdala
nTPM: 153.4
1955 Male, age 76, both hemispheres 208.0
2609 Male, age 75, right hemisphere 203.4
2243 Female, age 91, right hemisphere 140.7
2110 Male, age 80, left hemisphere 134.8
2685 Female, age 94, left hemisphere 120.9
2827 Female, age 67, right hemisphere 112.3
Central amygdala
nTPM: 204.3
1905 Male, age 76, both hemispheres 262.7
2515 Male, age 75, right hemisphere 250.3
2826 Female, age 94, left hemisphere 240.3
2701 Female, age 91, right hemisphere 137.8
2239 Male, age 80, left hemisphere 130.6
Corticomedial amygdala
nTPM: 153.2
2428 Male, age 75, right hemisphere 217.1
2240 Male, age 76, both hemispheres 184.6
2242 Female, age 91, right hemisphere 155.1
2429 Female, age 94, left hemisphere 140.3
2829 Male, age 80, left hemisphere 123.6
2535 Female, age 67, right hemisphere 98.7
Lateral amygdala
nTPM: 199.1
1883 Male, age 76, both hemispheres 316.0
2516 Male, age 75, right hemisphere 224.9
2534 Female, age 94, left hemisphere 205.2
2256 Male, age 80, left hemisphere 163.9
2830 Female, age 67, right hemisphere 144.0
2255 Female, age 91, right hemisphere 140.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

404.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 404.1
Samples: 181

Max nTPM: 1136.8
Min nTPM: 149.8
Std nTPM: 142.3
Median nTPM: 384.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1136.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 954.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 809.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 796.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 749.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 725.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 699.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 691.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 688.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 677.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 649.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 614.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 611.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 608.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 607.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 590.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 589.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 578.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 573.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 557.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 552.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 536.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 533.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 532.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 527.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 523.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 518.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 516.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 513.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 508.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 507.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 503.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 502.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 500.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 499.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 496.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 490.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 489.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 486.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 481.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 480.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 479.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 479.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 478.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 472.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 471.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 470.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 470.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 462.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 461.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 460.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 459.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 458.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 458.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 453.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 448.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 447.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 444.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 439.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 438.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 436.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 436.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 434.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 434.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 432.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 431.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 430.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 429.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 428.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 427.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 421.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 418.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 415.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 414.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 410.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 408.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 406.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 405.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 404.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 398.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 396.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 394.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 393.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 391.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 389.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 389.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 388.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 388.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 386.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 384.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 384.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 382.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 381.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 379.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 378.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 376.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 374.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 369.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 369.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 369.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 366.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 366.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 365.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 365.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 364.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 359.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 359.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 357.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 355.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 353.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 353.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 353.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 352.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 350.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 348.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 345.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 345.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 340.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 340.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 338.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 338.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 337.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 336.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 336.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 333.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 332.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 329.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 325.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 325.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 325.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 324.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 321.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 320.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 316.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 314.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 312.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 312.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 311.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 310.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 308.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 307.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 306.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 303.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 303.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 300.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 298.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 288.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 283.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 282.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 278.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 277.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 276.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 271.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 269.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 268.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 266.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 258.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 256.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 256.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 255.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 248.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 246.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 242.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 237.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 234.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 232.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 231.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 230.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 225.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 224.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 219.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 215.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 214.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 214.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 210.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 201.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 201.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 196.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 174.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 166.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 149.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

122.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 122.9
FF:10151-102I7 76 years, female 122.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.5
Pig sample Sample description nTPM
Amygdala
nTPM: 126.5
Samples: 4

Max nTPM: 141.2
Min nTPM: 104.3
Sample A Female 104.3
Sample B Female 141.2
Sample C Male 140.2
Sample D Male 120.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 39.9
Samples: 4

Max nTPM: 41.9
Min nTPM: 38.8
Sample A Male 38.8
Sample B Male 39.8
Sample C Female 38.9
Sample D Female 41.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.7
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 1.0
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.7
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.3

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