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MYL6
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  • MYL6
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1799.1 nTPM
HPA:1118.5 nTPM
GTEx:1799.1 nTPM
FANTOM5:413.1 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA046859Antibody HPA063034
Glandular cells Not detectedLow

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1118.5
overview
Male, age 65
Small intestine sample 232
nTPM: 880.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1235
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1154.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1204.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1799.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1799.1
Samples: 207

Max nTPM: 6754.9
Min nTPM: 701.1
Std nTPM: 1201.2
Median nTPM: 1365.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 6754.9
GTEX-178AV-1226-SM-GOR11 40-49 years, male 6205.1
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 5358.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 5313.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 5293.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 5274.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 5150.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4844.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 4829.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 4658.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 4636.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4599.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 4581.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 4572.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 4508.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 4440.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4339.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 4011.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3964.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 3946.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3877.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3752.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3735.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3595.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3590.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3525.5
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 3324.8
GTEX-1192X-2526-SM-59868 50-59 years, male 3272.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3034.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2875.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2805.2
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2755.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2749.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2656.3
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 2567.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2546.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 2521.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2502.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2405.2
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 2383.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2326.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2296.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2275.1
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 2222.8
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2202.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2134.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2090.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2056.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2043.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1990.2
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1957.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1907.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1899.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1870.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1841.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1792.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1754.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1737.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1732.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1697.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1677.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1672.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1670.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1666.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1663.2
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1640.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1627.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1614.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1597.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1593.3
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1590.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1586.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1581.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1579.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1576.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1573.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1571.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1562.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1537.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1534.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1529.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1505.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1505.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1483.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1474.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1449.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1440.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1435.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1430.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1427.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1427.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1419.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1416.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1410.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1407.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1406.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1401.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1400.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1396.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1391.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1383.9
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1381.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1368.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1365.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1361.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1358.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1358.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1356.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1346.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1334.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1321.2
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1317.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1304.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1303.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1302.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1300.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1267.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1252.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1249.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1243.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1241.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1238.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1237.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1227.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1225.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1214.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1207.3
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1206.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1202.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1196.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1189.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1188.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1171.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1163.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1162.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1157.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1155.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1149.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1137.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1134.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1127.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1123.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1121.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1119.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1119.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1114.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1112.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1107.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1105.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1104.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1101.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1097.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1093.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1086.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1085.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1069.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1064.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1063.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1047.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 1036.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1035.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1034.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1027.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1024.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1019.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1019.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1013.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1008.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1007.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1006.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1002.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 996.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 977.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 974.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 973.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 964.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 958.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 944.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 934.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 933.0
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 929.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 920.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 915.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 908.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 881.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 881.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 876.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 869.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 867.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 835.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 827.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 823.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 805.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 802.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 801.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 775.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 771.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 770.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 763.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 759.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 753.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 747.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 741.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 735.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 731.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 713.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 701.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

413.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 413.1
FF:10024-101D6 15,40,85 years, mixed 413.1

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