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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:860.0 nTPM
GTEx:860.0 nTPM
FANTOM5:259.1 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

860.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 860.0
Samples: 105

Max nTPM: 1371.3
Min nTPM: 346.0
Std nTPM: 219.6
Median nTPM:
386_1 76 years, male 1371.3
375_1 74 years, female 1366.3
237_1 82 years, male 1319.6
319_1 81 years, male 1281.7
218_1 71 years, female 1223.2
35_1 74 years, female 1217.1
447_1 81 years, male 1198.3
379_1 60 years, male 1187.0
6_1 73 years, female 1170.5
99_1 64 years, male 1151.1
355_1 70 years, female 1147.8
377_1 82 years, female 1139.0
352_1 62 years, male 1101.2
354_1 81 years, female 1092.9
384_1 83 years, male 1091.4
356_1 87 years, female 1091.1
394_1 75 years, female 1086.3
350_1 84 years, female 1056.7
177_1 74 years, male 1055.6
243_1 75 years, male 1053.1
163_1 78 years, male 1052.8
172_1 72 years, female 1042.6
286_1 68 years, female 1038.0
321_1 62 years, female 1032.1
115_1 83 years, male 1015.9
353_1 82 years, female 1015.2
189_1 76 years, male 993.6
229_1 69 years, female 991.6
153_1 70 years, female 983.8
335_1 73 years, female 979.7
322_1 76 years, male 979.6
376_1 75 years, female 973.5
317_1 60 years, male 973.2
404_1 82 years, female 965.6
316_1 62 years, male 963.4
246_1 77 years, male 958.3
389_1 86 years, female 957.7
406_1 79 years, male 945.0
349_1 83 years, male 940.7
351_1 91 years, male 940.1
17_1 71 years, male 939.5
503_1 68 years, male 935.1
173_1 67 years, male 910.6
396_1 62 years, male 906.5
266_1 85 years, male 904.9
292_1 71 years, male 900.6
318_1 68 years, male 890.6
126_1 63 years, male 889.8
264_1 73 years, female 886.2
347_1 72 years, male 883.9
320_1 89 years, female 878.1
137_1 83 years, male 877.9
452_1 88 years, female 870.5
251_1 78 years, male 856.8
526_1 61 years, male 856.4
425_1 59 years, female 850.5
480_1 63 years, male 847.7
405_1 91 years, male 839.6
2_1 77 years, female 837.7
120_1 70 years, female 834.9
9_1 66 years, female 823.7
295_1 61 years, female 815.4
145_1 84 years, male 802.3
506_1 65 years, male 800.2
162_1 79 years, female 790.8
315_1 62 years, female 783.6
4_1 88 years, female 783.3
324_1 76 years, male 777.2
293_1 68 years, female 766.4
109_1 81 years, female 751.4
348_1 84 years, male 750.0
142_1 61 years, female 748.6
254_1 77 years, female 748.1
468_1 89 years, male 744.9
265_1 87 years, male 744.6
291_1 76 years, male 743.9
517_1 88 years, male 742.5
518_1 75 years, female 733.9
18_1 88 years, male 721.5
42_1 85 years, male 720.6
41_1 94 years, female 719.7
313_1 79 years, female 716.7
307_1 66 years, female 694.1
217_1 76 years, male 686.6
117_1 61 years, male 685.9
81_1 67 years, male 659.6
308_1 70 years, female 643.5
139_1 64 years, female 639.0
311_1 78 years, male 638.5
414_1 84 years, female 623.7
119_1 70 years, female 622.9
415_1 77 years, female 612.1
288_1 66 years, female 594.0
43_1 64 years, female 579.9
499_1 55 years, female 557.9
314_1 67 years, male 545.8
32_1 67 years, male 522.6
466_1 57 years, female 520.2
495_1 57 years, female 515.1
89_1 63 years, male 476.5
413_1 59 years, female 461.7
501_1 88 years, male 430.0
149_1 88 years, male 397.6
490_1 67 years, female 371.5
491_1 89 years, female 346.0
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

259.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 259.1
FF:10030-101E3 24-65 years, mixed 259.1

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