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FXYD3
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  • TISSUE

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  • FXYD3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Low
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:300.1 nTPM
HPA:102.5 nTPM
GTEx:300.1 nTPM
FANTOM5:97.3 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA010856
Endocrine cells Medium
Enterocytes Low
Enterocytes - Microvilli Not detected
Goblet cells Medium
Paneth cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.5
overview
Male, age 65
Small intestine sample 232
nTPM: 61.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 213.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 70.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 65.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 300.1
Samples: 207

Max nTPM: 1974.6
Min nTPM: 3.8
Std nTPM: 390.1
Median nTPM: 137.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1974.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1938.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1855.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1669.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1319.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1307.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1214.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1195.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1160.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1114.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1079.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 1056.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1051.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1048.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 989.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 918.8
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 912.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 912.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 903.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 862.2
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 857.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 856.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 824.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 804.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 802.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 796.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 790.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 768.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 766.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 763.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 699.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 681.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 681.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 680.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 668.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 662.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 638.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 622.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 600.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 597.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 522.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 491.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 489.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 488.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 478.7
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 470.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 462.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 461.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 458.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 453.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 449.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 449.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 446.7
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 433.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 424.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 408.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 400.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 393.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 380.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 370.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 369.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 367.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 365.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 356.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 355.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 336.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 330.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 328.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 325.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 313.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 304.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 298.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 291.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 284.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 268.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 261.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 260.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 254.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 249.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 244.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 242.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 242.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 240.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 222.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 217.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 215.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 215.4
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 214.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 207.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 201.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 197.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 192.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 191.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 165.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 162.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 160.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 153.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 153.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 152.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 148.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 146.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 140.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 138.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 137.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 133.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 132.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 124.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 117.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 113.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 112.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 111.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 109.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 99.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 96.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 89.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 86.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 86.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 84.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 82.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 76.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 60.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 58.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 57.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 55.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 51.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 51.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 50.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 49.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 49.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 46.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 45.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 44.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 43.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 41.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 39.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 39.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 34.7
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 34.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 34.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 34.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 34.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 32.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 32.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 31.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 28.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 26.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 25.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 22.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 22.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 21.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 20.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 20.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 20.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 20.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 19.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 18.3
GTEX-1192X-2526-SM-59868 50-59 years, male 17.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 17.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 17.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 16.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 16.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 16.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 16.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 16.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 16.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 16.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 15.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 15.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 15.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 15.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 15.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 14.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 14.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 14.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 12.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 11.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 11.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 11.2
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 10.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 10.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 10.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 9.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 9.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 9.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 9.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 8.5
GTEX-178AV-1226-SM-GOR11 40-49 years, male 7.9
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 7.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 7.6
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 7.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 6.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 6.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 6.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 6.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 6.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 6.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 6.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 6.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 6.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 4.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 4.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 4.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 4.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 97.3
FF:10024-101D6 15,40,85 years, mixed 97.3

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