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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:61.8 nTPM
HPA Brain:57.7 nTPM
GTEx:61.8 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:31.6 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.7
Sample id Sample description nTPM
Amygdala
nTPM: 57.7
2695 Female, age 67, right hemisphere 73.2
1987 Female, age 91, left hemisphere 58.9
2814 Male, age 76, right hemisphere 58.0
2514 Male, age 75, right hemisphere 49.7
2517 Female, age 94, left hemisphere 48.7
Basal amygdala
nTPM: 47.4
2609 Male, age 75, right hemisphere 62.6
2110 Male, age 80, left hemisphere 54.8
1955 Male, age 76, both hemispheres 47.6
2243 Female, age 91, right hemisphere 43.8
2685 Female, age 94, left hemisphere 38.2
2827 Female, age 67, right hemisphere 37.6
Central amygdala
nTPM: 54.8
2515 Male, age 75, right hemisphere 67.4
1905 Male, age 76, both hemispheres 55.8
2239 Male, age 80, left hemisphere 53.2
2826 Female, age 94, left hemisphere 52.9
2701 Female, age 91, right hemisphere 44.8
Corticomedial amygdala
nTPM: 42.9
2428 Male, age 75, right hemisphere 56.7
2829 Male, age 80, left hemisphere 52.6
2242 Female, age 91, right hemisphere 42.7
2429 Female, age 94, left hemisphere 35.6
2240 Male, age 76, both hemispheres 35.2
2535 Female, age 67, right hemisphere 34.5
Lateral amygdala
nTPM: 49.3
2516 Male, age 75, right hemisphere 60.8
2256 Male, age 80, left hemisphere 57.3
2255 Female, age 91, right hemisphere 49.3
1883 Male, age 76, both hemispheres 44.1
2830 Female, age 67, right hemisphere 44.0
2534 Female, age 94, left hemisphere 40.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 61.8
Samples: 181

Max nTPM: 173.1
Min nTPM: 14.1
Std nTPM: 27.1
Median nTPM: 56.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 173.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 159.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 138.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 135.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 129.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 127.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 124.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 119.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 116.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 110.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 110.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 109.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 108.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 103.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 98.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 98.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 96.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 93.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 91.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 90.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 89.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 89.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 88.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 85.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 85.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 82.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 82.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 81.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 81.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 81.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 80.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 80.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 78.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 78.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 78.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 77.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 77.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 77.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 76.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 76.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 75.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 75.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 73.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 72.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 72.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 71.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 71.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 70.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 70.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 70.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 69.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 69.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 67.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 67.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 67.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 67.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 66.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 66.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 65.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 65.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 65.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 65.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 64.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 64.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 63.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 62.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 61.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 61.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 61.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 60.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 60.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 59.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 59.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 59.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 59.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 58.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 57.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 57.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 57.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 56.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 56.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 55.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 55.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 55.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 54.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 53.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 53.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 53.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 53.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 52.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 52.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 52.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 52.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 52.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 52.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 52.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 50.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 50.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 50.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 50.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 49.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 49.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 48.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 48.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 48.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 47.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 46.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 46.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 45.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 45.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 45.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 45.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 45.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 45.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 44.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 44.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 44.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 43.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 43.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 43.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 43.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 43.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 43.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 43.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 42.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 42.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 42.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 41.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 41.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 41.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 41.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 40.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 40.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 39.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 39.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 39.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 39.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 39.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 39.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 39.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 38.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 38.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 37.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 37.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 37.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 35.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 35.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 34.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 34.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 34.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 34.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 33.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 32.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 31.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 30.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 30.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 30.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 29.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 29.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 28.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 28.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 26.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 25.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 23.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 22.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 21.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 20.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 19.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 14.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.5
FF:10151-102I7 76 years, female 68.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.5
Pig sample Sample description nTPM
Amygdala
nTPM: 21.5
Samples: 4

Max nTPM: 23.6
Min nTPM: 20.1
Sample A Female 20.1
Sample B Female 22.1
Sample C Male 23.6
Sample D Male 20.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 31.6
Samples: 4

Max nTPM: 38.8
Min nTPM: 27.9
Sample A Male 27.9
Sample B Male 28.5
Sample C Female 38.8
Sample D Female 31.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
67881784 Antisense, RP_040923_01_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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