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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.2
nTPM
Monaco:
59.3
nTPM
Schmiedel:
24.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.2
HPA sample
nTPM
Memory B-cell nTPM: 4.2
Samples: 6
Max nTPM: 6.6
Min nTPM: 1.0
P10809_1017
6.6
P10809_1025
4.2
P10809_1044
2.1
P10809_1063
6.0
P10809_1092
5.0
P10809_1105
1.0
Naive B-cell nTPM: 5.2
Samples: 6
Max nTPM: 8.0
Min nTPM: 0.8
P10809_1011
4.7
P10809_1029
6.5
P10809_1048
0.8
P10809_1067
6.3
P10809_1091
4.7
P10809_1104
8.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 37.9
Samples: 4
Max nTPM: 59.6
Min nTPM: 18.9
RHH5310_R3677
32.1
RHH5218_R3590
59.6
RHH5247_R3619
18.9
RHH5276_R3648
41.1
Naive B-cell nTPM: 59.3
Samples: 4
Max nTPM: 76.3
Min nTPM: 48.3
RHH5308_R3675
62.5
RHH5216_R3588
48.3
RHH5245_R3617
50.2
RHH5274_R3646
76.3
Non-switched memory B-cell nTPM: 53.7
Samples: 4
Max nTPM: 79.8
Min nTPM: 39.3
RHH5309_R3676
45.3
RHH5217_R3589
79.8
RHH5246_R3618
39.3
RHH5275_R3647
50.4
Plasmablast nTPM: 36.4
Samples: 4
Max nTPM: 49.5
Min nTPM: 21.8
RHH5312_R3679
39.6
RHH5220_R3592
21.8
RHH5249_R3621
34.6
RHH5278_R3650
49.5
Switched memory B-cell nTPM: 49.1
Samples: 4
Max nTPM: 80.9
Min nTPM: 35.3
RHH5311_R3678
44.8
RHH5219_R3591
35.4
RHH5248_R3620
80.9
RHH5277_R3649
35.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
