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  • TISSUE

  • BRAIN

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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Medium
Goblet cells: Medium
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:237.4 nTPM
HPA:237.4 nTPM
GTEx:143.7 nTPM
FANTOM5:257.8 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019004Antibody HPA073666
Endocrine cells -Medium
Enterocytes -Medium
Enterocytes - Microvilli -Medium
Glandular cells Medium-
Goblet cells -Medium
Paneth cells -Not detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.4
overview
Male, age 65
Small intestine sample 232
nTPM: 192.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 366.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 215.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 174.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 143.7
Samples: 207

Max nTPM: 615.0
Min nTPM: 40.3
Std nTPM: 96.5
Median nTPM: 106.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 615.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 489.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 425.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 422.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 403.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 365.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 344.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 336.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 328.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 326.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 325.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 322.9
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 300.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 299.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 298.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 289.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 287.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 278.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 277.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 277.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 275.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 268.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 266.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 266.1
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 263.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 259.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 251.4
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 250.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 245.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 243.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 238.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 238.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 236.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 232.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 231.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 230.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 229.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 228.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 228.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 227.5
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 227.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 226.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 226.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 221.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 221.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 221.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 218.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 218.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 213.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 212.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 211.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 209.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 209.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 209.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 206.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 198.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 197.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 197.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 190.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 186.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 185.7
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 185.7
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 185.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 182.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 179.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 178.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 175.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 173.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 172.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 166.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 165.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 165.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 163.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 163.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 163.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 161.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 159.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 157.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 154.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 149.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 148.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 148.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 146.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 144.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 142.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 141.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 134.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 132.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 131.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 130.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 130.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 129.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 128.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 128.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 128.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 126.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 126.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 126.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 117.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 117.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 109.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 107.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 107.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 106.6
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 105.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 103.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 102.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 102.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 101.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 100.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 97.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 96.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 95.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 95.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 94.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 94.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 93.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 92.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 90.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 90.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 89.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 89.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 87.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 87.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 87.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 84.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 83.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 83.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 83.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 83.1
GTEX-1192X-2526-SM-59868 50-59 years, male 81.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 81.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 81.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 80.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 79.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 79.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 78.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 77.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 76.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 75.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 73.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 73.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 72.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 71.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 70.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 70.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 70.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 70.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 69.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 68.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 68.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 68.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 67.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 66.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 66.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 66.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 65.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 64.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 63.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 63.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 62.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 62.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 62.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 62.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 61.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 61.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 60.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 59.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 59.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 59.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 59.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 59.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 58.4
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 57.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 57.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 57.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 56.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 56.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 56.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 56.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 55.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 55.5
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 54.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 53.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 53.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 53.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 52.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 52.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 51.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 51.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 51.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 51.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 50.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 50.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 49.9
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 49.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 49.5
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 49.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 49.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 49.0
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 47.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 46.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 45.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 44.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 41.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 41.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 40.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

257.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 257.8
FF:10024-101D6 15,40,85 years, mixed 257.8

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