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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:14.8 nTPM
GTEx:14.4 nTPM
FANTOM5:22.6 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA024075
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.8
Sample id Sample description nTPM
Hippocampus
nTPM: 14.8
2529 Female, age 94, left hemisphere 20.1
2621 Female, age 67, right hemisphere 15.4
1911 Female, age 85, right hemisphere 14.2
1855 Male, age 76, left hemisphere 13.1
2148 Female, age 91, left hemisphere 13.1
1898 Male, age 80, left hemisphere 12.7

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.4
Samples: 197

Max nTPM: 48.9
Min nTPM: 2.9
Std nTPM: 9.0
Median nTPM: 11.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 48.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 48.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 42.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 42.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 42.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 36.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 35.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 35.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 34.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 34.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 33.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 33.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 32.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 32.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 31.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 29.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 29.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 28.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 28.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 26.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 26.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 25.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 25.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 24.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 24.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 23.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 23.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 23.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 22.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 22.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 21.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 21.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 21.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 21.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 21.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 21.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 20.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 20.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 20.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 19.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 19.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 19.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 19.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 19.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 18.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 18.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 18.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 18.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 18.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 18.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 17.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 17.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 17.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 17.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 17.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 17.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 17.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 17.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 17.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 17.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 16.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 16.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 16.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 16.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 15.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 15.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 15.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 15.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 15.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 15.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 15.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 14.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 14.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 14.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 14.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 14.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 13.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 13.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 13.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 13.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 13.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 13.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 13.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 13.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 13.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 12.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 12.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 12.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 12.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 12.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 12.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 12.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 12.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 12.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 12.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 12.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 12.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 11.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 11.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 11.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 11.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 11.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 11.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 11.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 11.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 11.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 11.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 11.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 11.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 11.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 11.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 11.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 11.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 10.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 10.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 10.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 10.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 10.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 10.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 10.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 10.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 10.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 9.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 9.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 9.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 9.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 9.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 9.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 9.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 9.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 9.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 9.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 9.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 9.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 8.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 8.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 8.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 8.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 8.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 8.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 8.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 8.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 8.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 8.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 8.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 8.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 8.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 8.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 8.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 7.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 7.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 7.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 7.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 7.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 7.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 7.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 7.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 7.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 7.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 7.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 7.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 7.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 6.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 6.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 6.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 6.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 6.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 6.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 5.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 5.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 5.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 5.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 5.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 5.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 5.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 5.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 5.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 5.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 5.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 5.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 5.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 5.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 5.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 4.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 4.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 4.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 4.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 4.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 4.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 4.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 3.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 3.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 3.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 3.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 3.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 2.9
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 22.6
FF:10153-102I9 76 years, female 32.7
FF:10169-103B7 60 years, female 12.4

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