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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:292.9 nTPM
GTEx:292.9 nTPM
FANTOM5:647.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB005052
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 292.9
Samples: 170

Max nTPM: 500.2
Min nTPM: 159.7
Std nTPM: 61.7
Median nTPM: 284.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 500.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 465.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 449.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 448.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 445.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 442.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 433.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 423.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 417.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 402.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 395.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 388.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 382.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 377.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 376.7
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 375.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 371.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 364.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 364.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 360.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 360.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 355.5
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 354.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 354.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 353.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 352.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 351.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 350.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 349.1
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 348.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 347.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 346.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 345.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 343.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 339.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 338.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 337.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 335.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 335.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 335.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 333.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 331.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 330.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 330.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 328.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 327.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 326.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 325.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 325.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 323.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 322.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 319.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 316.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 315.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 315.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 313.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 312.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 310.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 310.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 307.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 306.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 306.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 306.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 305.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 304.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 304.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 304.2
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 303.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 303.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 302.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 302.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 301.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 301.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 300.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 300.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 300.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 296.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 296.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 294.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 293.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 289.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 287.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 286.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 286.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 284.7
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 283.7
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 281.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 281.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 281.2
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 280.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 280.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 279.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 278.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 276.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 273.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 273.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 273.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 272.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 271.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 269.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 269.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 268.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 268.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 268.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 268.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 268.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 268.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 267.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 267.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 266.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 265.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 265.8
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 264.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 264.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 263.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 262.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 261.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 260.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 260.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 258.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 258.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 257.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 256.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 254.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 254.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 253.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 253.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 252.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 250.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 249.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 249.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 247.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 246.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 245.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 243.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 243.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 242.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 240.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 237.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 235.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 235.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 234.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 230.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 229.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 229.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 228.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 228.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 227.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 225.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 223.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 223.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 219.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 217.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 216.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 215.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 213.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 212.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 212.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 210.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 210.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 210.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 209.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 204.3
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 197.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 193.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 192.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 191.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 183.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 161.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 159.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

647.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 647.0
FF:10204-103F6 68 years, female 647.0

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