We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ISOC1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ISOC1
TISSUE PUTAMEN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Tissue methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:9.4 nTPM
GTEx:11.2 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:12.5 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.4
Sample id Sample description nTPM
Putamen
nTPM: 9.4
1838 Male, age 80, right hemisphere 11.9
1937 Female, age 91, right hemisphere 11.8
2482 Female, age 94, left hemisphere 10.4
1829 Male, age 74, unknown 10.2
2466 Female, age 79, unknown 10.0
2647 Male, age 75, left hemisphere 6.0
2489 Female, age 72, unknown 5.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 11.2
Samples: 254

Max nTPM: 21.7
Min nTPM: 4.0
Std nTPM: 2.3
Median nTPM: 11.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 21.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 21.3
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 18.0
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 16.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 16.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 15.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 15.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 15.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 15.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 15.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 15.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 15.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 15.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 15.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 15.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 15.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 14.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 14.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 14.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 14.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 14.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 14.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 14.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 14.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 14.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 14.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 13.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 13.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 13.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 13.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 13.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 13.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 13.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 13.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 13.6
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 13.6
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 13.5
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 13.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 13.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 13.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 13.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 13.3
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 13.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 13.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 13.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 13.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 13.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 13.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 13.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 13.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 13.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 13.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 13.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 12.9
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 12.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 12.9
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 12.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 12.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 12.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 12.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 12.7
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 12.7
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 12.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 12.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 12.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 12.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 12.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 12.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 12.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 12.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 12.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 12.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 12.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 12.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 12.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 12.4
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 12.3
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 12.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 12.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 12.2
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 12.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 12.2
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 12.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 12.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 12.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 12.1
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 12.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 12.0
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 12.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 12.0
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 12.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 12.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 12.0
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 12.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 11.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 11.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 11.9
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 11.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 11.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 11.8
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 11.7
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 11.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 11.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 11.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 11.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 11.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 11.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 11.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 11.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 11.6
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 11.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 11.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 11.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 11.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 11.5
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 11.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 11.4
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 11.4
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 11.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 11.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 11.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 11.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 11.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 11.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 11.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 11.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 11.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 11.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 11.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 11.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 11.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 11.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 11.0
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 10.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 10.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 10.9
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 10.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 10.9
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 10.9
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 10.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 10.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 10.8
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 10.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 10.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 10.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 10.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 10.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 10.7
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 10.7
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 10.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 10.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 10.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 10.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 10.6
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 10.5
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 10.5
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 10.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 10.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 10.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 10.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 10.4
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 10.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 10.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 10.3
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 10.3
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 10.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 10.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 10.2
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 10.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 10.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 10.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 10.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 10.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 10.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 10.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 10.0
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 10.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 9.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 9.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 9.8
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 9.8
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 9.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 9.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 9.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 9.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 9.7
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 9.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 9.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 9.6
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 9.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 9.5
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 9.5
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 9.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 9.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 9.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 9.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 9.3
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 9.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 9.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 9.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 9.2
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 9.2
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 9.2
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 9.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 9.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 9.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 9.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 9.0
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 9.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 9.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 9.0
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 9.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 8.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 8.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 8.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 8.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 8.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 8.8
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 8.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 8.7
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 8.7
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 8.6
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 8.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 8.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 8.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 8.5
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 8.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 8.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 8.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 8.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 8.3
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 8.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 8.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 8.2
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 8.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 8.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 8.0
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 7.9
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 7.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 7.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 7.4
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 7.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 7.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 7.0
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 6.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 6.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 6.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 6.8
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 6.6
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 6.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6.3
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 6.2
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 4.0
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 19.0
FF:10176-103C5 60 years, female 19.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.5
Pig sample Sample description nTPM
Putamen
nTPM: 12.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 9.2
Sample A Female 17.6
Sample B Female 9.2
Sample C Male 11.5
Sample D Male 11.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo