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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
18.2
nTPM
Schmiedel:
18.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
gdT-cell nTPM: 0.8
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1007
1.2
P10809_1022
0.3
P10809_1041
0.0
P10809_1060
1.1
P10809_1077
1.4
P10809_1098
0.9
MAIT T-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1006
0.9
P10809_1024
0.2
P10809_1043
0.0
P10809_1062
0.6
P10809_1083
0.8
P10809_1097
0.1
Memory CD4 T-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1014
0.4
P10809_1026
0.0
P10809_1045
0.4
P10809_1064
0.3
P10809_1086
0.4
P10809_1113
0.2
Memory CD8 T-cell nTPM: 1.1
Samples: 5
Max nTPM: 2.4
Min nTPM: 0.3
P10809_1012
2.4
P10809_1027
0.3
P10809_1046
1.3
P10809_1065
1.0
P10809_1111
0.7
Naive CD4 T-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1015
0.2
P10809_1030
0.0
P10809_1049
0.0
P10809_1068
0.0
P10809_1085
0.1
P10809_1112
0.0
Naive CD8 T-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.2
P10809_1016
0.5
P10809_1031
0.3
P10809_1050
0.2
P10809_1069
0.3
P10809_1087
0.3
P10809_1110
0.7
T-reg nTPM: 0.8
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.2
P10809_1018
0.7
P10809_1037
1.4
P10809_1056
0.2
P10809_1075
1.1
P10809_1094
0.6
P10809_1106
0.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 2.1
Samples: 4
Max nTPM: 2.8
Min nTPM: 1.0
RHH5202_R3573
2.7
RHH5230_R3602
1.9
RHH5259_R3631
2.8
RHH5288_R3660
1.0
Effector memory CD8 T-cell nTPM: 7.5
Samples: 4
Max nTPM: 14.0
Min nTPM: 5.0
RHH5203_R3574
5.0
RHH5231_R3603
5.3
RHH5260_R3632
14.0
RHH5289_R3661
5.8
MAIT T-cell nTPM: 6.6
Samples: 4
Max nTPM: 9.6
Min nTPM: 3.5
RHH5233_R3605
3.5
RHH5205_R3576
5.2
RHH5262_R3634
9.6
RHH5297_R3663
7.9
Memory CD4 T-cell TFH nTPM: 0.6
Samples: 4
Max nTPM: 1.2
Min nTPM: 0.0
RHH5300_R3666
1.2
RHH5236_R3608
0.5
RHH5265_R3637
0.8
RHH5208_R3579
0.0
Memory CD4 T-cell Th1 nTPM: 1.8
Samples: 4
Max nTPM: 3.3
Min nTPM: 1.1
RHH5210_R3581
3.3
RHH5302_R3668
1.2
RHH5238_R3610
1.6
RHH5267_R3639
1.1
Memory CD4 T-cell Th1/Th17 nTPM: 4.1
Samples: 4
Max nTPM: 7.5
Min nTPM: 2.4
RHH5303_R3669
2.4
RHH5211_R3582
3.9
RHH5239_R3611
2.7
RHH5268_R3640
7.5
Memory CD4 T-cell Th17 nTPM: 4.2
Samples: 4
Max nTPM: 6.5
Min nTPM: 1.9
RHH5304_R3670
5.5
RHH5212_R3583
2.8
RHH5240_R3612
1.9
RHH5269_R3641
6.5
Memory CD4 T-cell Th2 nTPM: 1.7
Samples: 4
Max nTPM: 3.1
Min nTPM: 1.1
RHH5305_R3671
1.3
RHH5213_R3584
3.1
RHH5241_R3613
1.3
RHH5270_R3642
1.1
Naive CD4 T-cell nTPM: 0.2
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
RHH5306_R3672
0.2
RHH5214_R3585
0.0
RHH5242_R3614
0.4
RHH5271_R3643
0.0
Naive CD8 T-cell nTPM: 0.5
Samples: 4
Max nTPM: 0.8
Min nTPM: 0.3
RHH5201_R3572
0.3
RHH5229_R3601
0.4
RHH5258_R3630
0.8
RHH5287_R3659
0.3
Non-Vd2 gdTCR nTPM: 18.2
Samples: 4
Max nTPM: 29.4
Min nTPM: 9.8
RHH5235_R3607
15.8
RHH5264_R3636
17.9
RHH5207_R3578
9.8
RHH5299_R3665
29.4
T-reg nTPM: 2.1
Samples: 4
Max nTPM: 3.7
Min nTPM: 0.4
RHH5301_R3667
2.1
RHH5237_R3609
0.4
RHH5266_R3638
3.7
RHH5209_R3580
2.1
Terminal effector memory CD4 T-cell nTPM: 3.9
Samples: 2
Max nTPM: 5.3
Min nTPM: 2.4
RHH5243_R3615
2.4
RHH5272_R3644
5.3
Terminal effector memory CD8 T-cell nTPM: 9.6
Samples: 4
Max nTPM: 13.2
Min nTPM: 5.7
RHH5232_R3604
5.7
RHH5204_R3575
13.0
RHH5261_R3633
13.2
RHH5296_R3662
6.5
Vd2 gdTCR nTPM: 6.2
Samples: 4
Max nTPM: 8.0
Min nTPM: 3.6
RHH5234_R3606
3.6
RHH5206_R3577
5.9
RHH5263_R3635
7.4
RHH5298_R3664
8.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
