We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
INTS13
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

 
Field
All
Term
Gene name
Class
Blood group antigen proteins
Subclass
 
Category
 
Keyword
Chromosome
External id
Tissue
 
Cell type
 
Expression
Antibody panel
 
Tissue
 
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
 
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Yes
Data type
Column
Gene


                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • RELIABILITY
                                  • SUBCELLULAR VARIATION
                                  • MULTILOCALIZATION
                                  • OTHER
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • Check all
                                  • Uncheck all
                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

                                          • SINGLE CELL

                                          • SUBCELL

                                          • CANCER

                                          • BLOOD

                                          • CELL LINE

                                          • STRUCTURE

                                          • INTERACTION

                                          • INTS13
                                          TISSUE PRIMARY DATA CAUDATE Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
                                          DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
                                          NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
                                          SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                          ANTIBODIES
                                          AND
                                          VALIDATION
                                          Dictionary
                                          Caudate
                                          Tissue proteome
                                          Tissue methods
                                          CAUDATE - Expression summary
                                          Protein expression
                                          Caudatei

                                          On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                          h
                                          m
                                          l
                                          n
                                          Glial cells: Medium
                                          Neuronal cells: Not detected
                                          RNA expressioni

                                          A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

                                          Scroll down to view mRNA expression data in more detail.

                                          GTEx:8.7 nTPM
                                          FANTOM5:11.7 Scaled Tags Per Million
                                          Pig:8.2 nTPM
                                          BRAIN - SINGLE CELL RNA EXPRESSION
                                          Explore single cell type data
                                          Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0102030405060nCPM

                                          CAUDATE - Antibody stainingi

                                          Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                          Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

                                          Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

                                          Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

                                          Antibody HPA039543
                                          Glial cells Medium
                                          Neuronal cells Not detected



                                          CAUDATE - GTEx RNA-seqi

                                          RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                          Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

                                          Max subtype nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          8.7
                                          GTEx sample id Sample description nTPM
                                          7.28.49.94.613.8024681012141618
                                          7.28.49.94.613.8024681012141618
                                          Brain - Caudate (basal ganglia)
                                          Average nTPM: 8.7
                                          Samples: 300

                                          Max nTPM: 19.0
                                          Min nTPM: 4.6
                                          Std nTPM: 2.1
                                          Median nTPM: 8.4
                                          GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 19.0
                                          GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 16.3
                                          GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 15.5
                                          GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 15.3
                                          GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.0
                                          GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 14.0
                                          GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 13.8
                                          GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 13.7
                                          GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 13.7
                                          GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 13.6
                                          GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 13.0
                                          GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 12.8
                                          GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 12.7
                                          GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 12.6
                                          GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 12.5
                                          GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 12.5
                                          GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 12.4
                                          GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 12.3
                                          GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 12.2
                                          GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 12.1
                                          GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 12.1
                                          GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 12.1
                                          GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 11.9
                                          GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 11.9
                                          GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 11.8
                                          GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 11.8
                                          GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 11.7
                                          GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 11.7
                                          GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 11.7
                                          GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 11.5
                                          GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 11.5
                                          GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 11.5
                                          GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 11.4
                                          GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 11.4
                                          GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 11.4
                                          GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 11.4
                                          GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 11.4
                                          GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 11.2
                                          GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 11.2
                                          GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 11.2
                                          GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 11.1
                                          GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 11.1
                                          GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 11.0
                                          GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10.9
                                          GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 10.9
                                          GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 10.9
                                          GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 10.8
                                          GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 10.6
                                          GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 10.6
                                          GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 10.5
                                          GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.4
                                          GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 10.4
                                          GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 10.4
                                          GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 10.3
                                          GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 10.3
                                          GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 10.3
                                          GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 10.3
                                          GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 10.2
                                          GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 10.2
                                          GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 10.2
                                          GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 10.1
                                          GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 10.1
                                          GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 10.1
                                          GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 10.1
                                          GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 10.1
                                          GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 10.1
                                          GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 10.0
                                          GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 10.0
                                          GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 10.0
                                          GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 10.0
                                          GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 10.0
                                          GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 9.9
                                          GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 9.9
                                          GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 9.9
                                          GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 9.9
                                          GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 9.9
                                          GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 9.8
                                          GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 9.7
                                          GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 9.7
                                          GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 9.6
                                          GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 9.6
                                          GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 9.6
                                          GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 9.6
                                          GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 9.6
                                          GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 9.5
                                          GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 9.5
                                          GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 9.5
                                          GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9.5
                                          GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 9.5
                                          GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 9.5
                                          GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 9.4
                                          GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 9.4
                                          GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 9.4
                                          GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 9.4
                                          GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 9.4
                                          GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 9.4
                                          GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 9.2
                                          GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 9.2
                                          GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 9.2
                                          GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 9.2
                                          GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 9.2
                                          GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 9.2
                                          GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 9.1
                                          GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 9.1
                                          GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 9.1
                                          GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 9.1
                                          GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 9.1
                                          GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 9.1
                                          GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 9.1
                                          GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 9.0
                                          GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 9.0
                                          GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 9.0
                                          GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 9.0
                                          GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 9.0
                                          GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 9.0
                                          GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 8.9
                                          GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 8.9
                                          GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 8.9
                                          GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 8.9
                                          GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 8.9
                                          GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 8.9
                                          GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 8.8
                                          GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 8.8
                                          GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 8.8
                                          GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 8.8
                                          GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 8.8
                                          GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 8.8
                                          GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 8.7
                                          GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 8.7
                                          GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 8.7
                                          GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 8.7
                                          GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 8.7
                                          GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 8.6
                                          GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 8.6
                                          GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 8.6
                                          GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 8.6
                                          GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 8.6
                                          GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 8.6
                                          GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 8.5
                                          GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 8.5
                                          GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 8.5
                                          GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 8.5
                                          GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 8.5
                                          GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 8.5
                                          GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 8.5
                                          GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 8.4
                                          GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 8.4
                                          GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 8.4
                                          GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 8.4
                                          GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 8.4
                                          GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 8.4
                                          GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 8.4
                                          GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8.4
                                          GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 8.4
                                          GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 8.4
                                          GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 8.4
                                          GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 8.4
                                          GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 8.4
                                          GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 8.4
                                          GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 8.3
                                          GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 8.3
                                          GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 8.3
                                          GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 8.3
                                          GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 8.3
                                          GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 8.3
                                          GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 8.3
                                          GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 8.3
                                          GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 8.3
                                          GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 8.2
                                          GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 8.2
                                          GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 8.2
                                          GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 8.2
                                          GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 8.2
                                          GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 8.1
                                          GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 8.1
                                          GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 8.1
                                          GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 8.1
                                          GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 8.0
                                          GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 8.0
                                          GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 8.0
                                          GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 8.0
                                          GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 7.9
                                          GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 7.9
                                          GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 7.9
                                          GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 7.9
                                          GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 7.9
                                          GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 7.9
                                          GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 7.9
                                          GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 7.9
                                          GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 7.8
                                          GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 7.8
                                          GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 7.8
                                          GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 7.8
                                          GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 7.7
                                          GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 7.7
                                          GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 7.7
                                          GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 7.7
                                          GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 7.7
                                          GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 7.7
                                          GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 7.6
                                          GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 7.6
                                          GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 7.6
                                          GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 7.6
                                          GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 7.5
                                          GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 7.5
                                          GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 7.5
                                          GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 7.5
                                          GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 7.5
                                          GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 7.5
                                          GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 7.5
                                          GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 7.5
                                          GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 7.5
                                          GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 7.4
                                          GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 7.4
                                          GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 7.4
                                          GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 7.4
                                          GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 7.4
                                          GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 7.4
                                          GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 7.3
                                          GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 7.3
                                          GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 7.3
                                          GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 7.2
                                          GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 7.2
                                          GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 7.2
                                          GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 7.2
                                          GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 7.2
                                          GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 7.1
                                          GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 7.1
                                          GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 7.1
                                          GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 7.1
                                          GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 7.1
                                          GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 7.1
                                          GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 7.0
                                          GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 7.0
                                          GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 7.0
                                          GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 6.9
                                          GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 6.9
                                          GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 6.8
                                          GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 6.8
                                          GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 6.8
                                          GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 6.8
                                          GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 6.8
                                          GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 6.8
                                          GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 6.8
                                          GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 6.8
                                          GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 6.8
                                          GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 6.8
                                          GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 6.8
                                          GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 6.7
                                          GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 6.7
                                          GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 6.7
                                          GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 6.7
                                          GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 6.7
                                          GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 6.7
                                          GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 6.7
                                          GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 6.6
                                          GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 6.6
                                          GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 6.6
                                          GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 6.6
                                          GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 6.6
                                          GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 6.6
                                          GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 6.6
                                          GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 6.5
                                          GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 6.5
                                          GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 6.5
                                          GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 6.5
                                          GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 6.5
                                          GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 6.5
                                          GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 6.4
                                          GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 6.4
                                          GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 6.4
                                          GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 6.3
                                          GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 6.3
                                          GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 6.3
                                          GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 6.3
                                          GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 6.3
                                          GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 6.2
                                          GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 6.2
                                          GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 6.2
                                          GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 6.1
                                          GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 6.1
                                          GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 6.1
                                          GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 6.0
                                          GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 6.0
                                          GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 5.9
                                          GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 5.9
                                          GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 5.9
                                          GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 5.9
                                          GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 5.9
                                          GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 5.8
                                          GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 5.8
                                          GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 5.7
                                          GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 5.7
                                          GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 5.7
                                          GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 5.6
                                          GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 5.4
                                          GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 5.3
                                          GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 5.2
                                          GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 5.0
                                          GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 4.6
                                          Show allShow less

                                          CAUDATE - FANTOM5 CAGEi

                                          RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                          Max subtype Scaled Tags Per Millioni

                                          Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                          11.7
                                          FANTOM5 sample id Sample description Scaled Tags Per Million
                                          Caudate nucleus
                                          Scaled Tags Per Million: 11.7
                                          FF:10164-103B2 76 years, female 11.7

                                          CAUDATE - Pig RNA-seqi

                                          RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

                                          Max subtype nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          8.2
                                          Pig sample Sample description nTPM
                                          7.98.38.57.48.7012345678
                                          7.98.38.57.48.7012345678
                                          Caudate
                                          nTPM: 8.2
                                          Samples: 4

                                          Max nTPM: 8.7
                                          Min nTPM: 7.4
                                          Sample A Female 8.4
                                          Sample B Female 8.1
                                          Sample C Male 8.7
                                          Sample D Male 7.4

                                          Contact

                                          • NEWS ARTICLES
                                          • PRESS ROOM

                                          The Project

                                          • INTRODUCTION
                                          • ORGANIZATION
                                          • PUBLICATIONS

                                          The Human Protein Atlas

                                          • DOWNLOADABLE DATA
                                          • LICENCE & CITATION
                                          • HELP & FAQ
                                          KAW logo The Human Protein Atlas project is funded
                                          by the Knut & Alice Wallenberg Foundation.

                                          Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
                                          GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo