We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
YBX3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • YBX3
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:185.5 nTPM
GTEx:185.5 nTPM
FANTOM5:410.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA034838
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 185.5
Samples: 170

Max nTPM: 395.5
Min nTPM: 84.3
Std nTPM: 63.9
Median nTPM: 180.6
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 395.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 380.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 377.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 374.2
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 361.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 348.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 319.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 317.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 306.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 285.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 281.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 280.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 278.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 277.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 277.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 275.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 273.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 266.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 257.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 256.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 254.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 253.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 253.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 252.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 251.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 250.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 248.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 245.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 245.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 244.0
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 240.8
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 240.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 237.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 236.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 234.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 233.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 232.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 232.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 232.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 230.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 227.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 227.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 225.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 222.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 222.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 221.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 216.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 216.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 212.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 212.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 211.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 211.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 209.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 208.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 206.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 206.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 205.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 204.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 203.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 202.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 202.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 202.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 201.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 199.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 197.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 196.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 193.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 192.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 192.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 191.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 191.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 190.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 189.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 188.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 187.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 187.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 187.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 184.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 184.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 183.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 183.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 183.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 181.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 181.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 180.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 180.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 180.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 179.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 176.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 175.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 170.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 164.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 164.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 163.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 161.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 160.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 158.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 158.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 158.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 158.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 155.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 155.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 154.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 153.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 153.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 152.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 151.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 150.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 149.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 149.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 147.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 147.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 146.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 145.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 145.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 144.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 144.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 144.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 144.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 143.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 142.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 142.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 140.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 140.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 139.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 139.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 138.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 137.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 134.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 134.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 134.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 133.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 132.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 132.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 131.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 129.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 129.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 128.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 125.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 124.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 123.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 123.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 121.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 119.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 119.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 118.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 118.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 118.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 118.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 118.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 116.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 115.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 113.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 113.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 113.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 112.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 112.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 112.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 111.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 110.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 107.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 105.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 105.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 101.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 99.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 98.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 92.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 85.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 85.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 84.3
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

410.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 410.7
FF:10204-103F6 68 years, female 410.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo