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ALDH18A1
HPA
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • ALDH18A1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:68.9 nTPM
HPA:68.9 nTPM
GTEx:41.2 nTPM
FANTOM5:103.8 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008333Antibody HPA012604
Glandular cells LowHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.9
overview
Male, age 65
Small intestine sample 232
nTPM: 79.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 86.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 49.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 59.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 41.2
Samples: 207

Max nTPM: 140.4
Min nTPM: 7.7
Std nTPM: 29.8
Median nTPM: 35.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 140.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 113.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 113.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 102.8
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 101.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 98.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 96.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 96.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 95.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 95.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 92.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 90.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 90.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 89.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 88.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 88.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 88.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 88.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 87.5
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 87.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 87.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 86.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 86.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 85.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 85.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 85.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 83.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 82.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 82.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 81.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 81.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 80.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 80.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 78.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 78.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 75.6
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 75.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 73.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 73.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 71.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 71.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 69.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 69.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 69.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 69.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 68.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 68.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 68.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 67.7
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 66.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 66.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 66.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 65.2
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 65.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 64.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 62.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 60.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 60.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 59.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 59.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 59.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 59.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 58.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 58.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 57.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 57.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 56.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 56.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 55.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 55.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 55.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 54.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 54.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 51.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 50.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 48.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 47.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 47.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 46.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 46.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 45.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 45.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 42.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 42.5
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 42.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 41.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 41.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 40.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 40.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 39.6
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 38.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 38.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 38.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 37.4
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 37.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 36.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 36.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 36.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 36.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 35.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 35.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 35.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 35.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 35.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 34.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 34.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 34.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 33.1
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 32.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 31.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 31.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 29.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 29.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 27.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 27.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 26.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 26.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 25.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 24.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 23.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 22.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 22.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 21.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 21.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 20.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 20.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 20.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 20.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 20.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 19.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 19.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 19.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 19.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 18.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 18.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 18.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 17.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 17.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 17.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 17.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 17.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 16.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 16.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 16.5
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 16.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 16.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 16.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 16.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 16.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 15.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 15.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 15.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 14.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 13.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 13.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 13.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 13.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 13.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 13.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 12.8
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 12.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 12.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 12.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 12.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 12.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 12.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 12.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 12.2
GTEX-178AV-1226-SM-GOR11 40-49 years, male 11.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 11.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 11.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 11.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 11.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 11.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 11.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 11.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 11.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 10.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 10.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 10.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 10.0
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 10.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 9.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 9.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 9.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 9.7
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 9.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 9.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 9.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 9.4
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 9.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 9.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 9.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 9.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 9.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 8.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 8.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 8.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 8.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 8.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 8.4
GTEX-1192X-2526-SM-59868 50-59 years, male 8.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 8.2
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 7.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 7.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 7.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 7.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

103.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 103.8
FF:10024-101D6 15,40,85 years, mixed 103.8

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